RetrogeneDB ID:
retro_ecab_468
Organism:
Horse ( Equus_caballus )
Location:
19:4319138-4319635 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.36 %
Coverage:
68.31 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
ATP1B3
Parental gene aliases:
No gene alias available
Parental gene description:
ATPase, Na+/K+ transporting, beta 3 polypeptide [Source:HGNC Symbol;Acc:806]

Genomic region (view in browser)





>retro_ecab_468
GGTTTGATCTTGATCTTGTGCCTAGTGTTTTATGGGTTCCTGGCTGCACTCTTTTCGTTC
TAATGTGGGCTACACTTCGGACTGTGAACGATGAGGTTCCAAAATATCATGATCAGATTG
CTAGTCTAGAATTAGGGCTTTTCAAAAAACAGCGAGTGCCTTAGAATACATGTTCAGTGT
GTCTGACCCAAATTCCTATAAAGGGTACATAGAAGACATTTGAAAGTTTCTAAAGCCATG
TGATTTAGAAGGACAGAAGAAGCACACAGTCTGTCCTGATGCAGCACTTTTTGAACAGAA
AAGTCCAATTTATGTTGCACGTCAGTCTCCTGTTTTCTTACTTGAAGAATGCAGTGGTGT
GCATGATCCTGATTTTGGCTCTTCAAAAAGGAAGCCCTTGTATTCTTGTAAAAATAAACA
GAATAAGTAGATTAAAGCCTCAAGGAAAACTAAGGATAGCAGTGGTTCAAAAATGAAAAT
ACAGCAGTTCTATCAAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GLILLFYLVFYGFLAALFSF-TMWAMLQTLNDEVPKYRDQIPSPGL-MVFPKPVTALDYSFRVSDPESYRGYVDDLTKFLKSYDLEEQKNLTACPDGALR
GLIL...LVFYGFLAALFSF..MWA.L.T.NDEVPKY.DQI.S..L...F.K...AL.Y.F.VSDP.SY.GY..D..KFLK..DLE.QK..T.CPD.AL.
Retrocopy
GLILILCLVFYGFLAALFSF/LMWATLRTVNDEVPKYHDQIASLEL/RAFQKTASALEYMFSVSDPNSYKGYIEDI*KFLKPCDLEGQKKHTVCPDAALF


Parental protein
EQKGPTYTACQFPVVSLKGCSGVEDPEFGYST-GNPCILVKMNRIIGLKPQGKPRINCISKGEKTATLS
EQK.P.Y.A.Q.PV..L..CSGV.DP.FG.S..G.PCILVK.NRI..LKPQGK.RI....K........
Retrocopy
EQKSPIYVARQSPVFLLEECSGVHDPDFGSSK\GSPCILVKINRISRLKPQGKLRIAVVQK*KYSSSIN


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide