RetrogeneDB ID:
retro_ecab_469
Organism:
Horse ( Equus_caballus )
Location:
19:7130660-7131170 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.0 %
Coverage:
77.38 %
Frameshifts:
3
Stop codons:
6


Parental gene:
Parental gene symbol:
MCUR1
Parental gene aliases:
No gene alias available
Parental gene description:
mitochondrial calcium uniporter regulator 1 [Source:HGNC Symbol;Acc:21097]

Genomic region (view in browser)





>retro_ecab_469
GTATCTGCATTTGAGTAGATCATGTATGACAACAAGGATGTCATCTACAAAGATGTGATC
ACCAAAATGCAGCAGATGGCTCTTCAGAAAATGTCTGAGATTGCTACTCTGAAAAAGGAT
ATGATTATTTTGGAGAAGAGTAAGTTTTCAGCCCACAAAGCAGAAAATGAGAAAAAATAA
AACTTGAATGACATCAGTGAAAACAGAAAGTAATGGATGAAGTGATCAAAGTCCAAATAG
ATAAAAGATTAAACTTCAATCTAGGAAAGAGCTGCATTAAAAAAATATCATATTCACTGT
ATGAAAGGAAGCTATGTGAAATGAGGACAAAAGTGGTAGCATTGCATGCCCAGCAAGATG
GGGCTGTCATCAGATGGAGAGGAAGTGTGTATTCAGGGTGCTGGCCTTAAAACCTTGTAG
GCATCATGGAAATTTTTTAATATTAAATATTTACCAGAGTCTGTATTTACATGCCTAACA
ATAGCTCTGAGATTTTATTGGCCATGGATA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VSALVKIVEANMSIVYKDMVTKMQQEITLQQIMSQIANVKKDMIIL-EKSEFSALRAENEKIKLELHRLKQQMMDEVVKVRTDTKLDFNLEKSRVKEL-Y
VSA...I...N....YKD..TKMQ....LQ.........K...I...E...FS......EKIKLE.H..KQ..MDEV.KV..D..L.FNL.KS..K...Y
Retrocopy
VSAFE*IMYDNKDVIYKDVITKMQ-QMALQKMSEIATLKKDMIILE/EE*VFSPQSRK*EKIKLE*HQ*KQKVMDEVIKVQIDKRLNFNLGKSCIKKISY


Parental protein
SLNERKLLEMRTEMVALHAQQDRAVT-QTDRK-IDTEVAGLKTMLESHKLDNIKYLAGSVFTCLTVALGFYRLWI
SL.ERKL.EMRT..VALHAQQD.AV..Q..RK......AGLKT...S.K..NIKYL..SVFTCLT.AL.FY..WI
Retrocopy
SLYERKLCEMRTKVVALHAQQDGAVI/QMERK/VCIQGAGLKTL*ASWKFFNIKYLPESVFTCLTIALRFYWPWI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide