RetrogeneDB ID:
retro_ecab_47
Organism:
Horse ( Equus_caballus )
Location:
16:53653367-53655314 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
96.07 %
Coverage:
55.54 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available
Genomic region (view in browser)
>retro_ecab_47
ATGGAGCACATACAGGGGGCCTGGAAGACGATCAGCAGTGGTTTTGGATTCAAAGACGCG
GTGTTTGATGGCCCCAGCTGTATCTGCCCTACAATAGTTCAGCAGTTTGGCTATCAGCGT
CGGGCGTCAGATGATGGCAAACTTACGGACTCTTCTAAGACAAGCAACACTATCTGTGTT
TTCTTGCCAAATAAGCAAAGAACGGTGGTCAGTGTGCGAAATGGAGTGAGCTTGCATGAC
TGCCTTATGAAAGCACTCAAGGTGAGGGGCCTGCAACCGGAGTGCTGTGCAGTGTTCAGA
CTTCTCCACGAACACAAAGGTAAAAAAGCACGTTTAGATTGGAATACTGATGCTGCCTCA
TTGATTGGAGAAGAACTTCAAGTAGATTTCCTGGATCATGTTCCTCTCACAACACACAGC
TTTGCTCGGAAGACCTTTCTGAAGCTTGCCTCTTGTGACATCTGTCAGAAGTTCTTGCTA
AATGGATTTCGATGTCAGACTTGTGGCTACAAATTTCATGAGCACTGTAGCACCAAAGTA
CCTACGATGTGTGTGGACTGGAGTAATATCAGACAACTCTTATTGTTTCCAAATTCCACT
TTTGGTGATAGTGGAGTCCCAGCACTGCCTTCCTTGACAATGCGTCGGATGCGAGAGTCT
GTTTCCCGGATGCCTGTTAGTTCCCAGCACAGATACTCCACGCTCCACGCCTTCACACTC
AACATCTCCAGTTCCTGCTCTGAAGGTTCCCTCTCCCAGAGGCAGAGGTCAACGTCCACA
CCTAATGTCCACATGGTCAGCACCACCCTGCCTGTGGACAGCAGGGTGATTGAGGATGCA
ATTCGAAGTCACAGTGAATCAGCTTCACCTTCAGCCTTGTCTAGCAGCCCCAACAATCTG
AGCCCAACGGGCTGGTCACAGCCTAAAACCCCTGTGCCAGCACAGAGAGAGCGGGCACCA
GGATCCGGGACCCAGGAGAAAAACAAAATTAGACCTCGTGGTCAGAGAGATTCAAGCTGT
TACTGGGAAATAGAAGCCAGTGAAGTGATGCTCTCCACTCGGATTGGGTCAGGCTCCTTT
GGAACTGTGTATAAGGGCAAATGGCACGGAGACGTTGCAGTGAAAATCTTAAAGGTTGTT
GACCCCACATCAGAGCACTTCCAGGCATTCAGGAACAAGGTGGCTGTCCTGCATAAAACA
CGGCACGTGAACGTCCTGCTCTTCATGGGGTACATGACGAAGGATAACCTGGCAATTGTG
ACCCAGTGGTGTGAGGGCAGCAGCCTCTACAAACACTTGCATGTCCAGGAGACCAAGTTC
CAGATGTTCCAGTTGATTGACATCACCCGGCAGACAGCTCAGGGAATGGACTATTTGCAT
GCAAAAAACATCATCCACAGAGATATGAAGTCCAAAAATATATTTCTCCACGAAGGCCTG
ACGGTGAAAATTGGAGACTTTGGTTTGGCAACAGTCAAGTCGCGCTGGAGTGGTTCTCAG
CAGGTTGAACAACCCACTGGCTCTGTCCTGTGGTTGGCCCCAGAGGTGATCCGAATGCAG
GATAATAACCCGTTCAGCTTCCAGTCCGATGTCTACTCCTATGGCATTGTACTGTATGAG
CTCATGACAGGGGAACTGCCTTACTCCCACATCAACAACCGAGATCAGATCCTCTTCATG
GTGGGCCGAGGATATGCCTCCCCAGACCTTAGTAAGCTATACAAGAACTGCCCCAAAGCA
GTGAAGAGGCTTGTGGCTGACTGCGTGAAGAAAGTTAAGGAGGAGAGGCCTCTTTTTCCC
CAGATCTTGTCTCCCGTTGAGTTGCTCCAACACTCTCTACCGAAAATCAACCGGAGTGCT
TCTGAGCCATCCCTGCATCGGGCGGCCCACACCAAGGACATCAATGCCTGCACGTTGACC
ACGTCCCCTAGACTACCTGTCTTCTAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.64 |
| SRP021940_cerebellum | 0.75 |
| SRP021940_embryo | 4.38 |
| SRP021940_placental_villous | 1.52 |
| SRP021940_synovial_membrane | 2.84 |
| SRP021940_testis | 2.14 |
Parental protein coverage
Changes in the retrocopy sequence
