RetrogeneDB ID:
retro_ecab_47
Organism:
Horse ( Equus_caballus )
Location:
16:53653367-53655314 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
96.07 %
Coverage:
55.54 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_47
ATGGAGCACATACAGGGGGCCTGGAAGACGATCAGCAGTGGTTTTGGATTCAAAGACGCG
GTGTTTGATGGCCCCAGCTGTATCTGCCCTACAATAGTTCAGCAGTTTGGCTATCAGCGT
CGGGCGTCAGATGATGGCAAACTTACGGACTCTTCTAAGACAAGCAACACTATCTGTGTT
TTCTTGCCAAATAAGCAAAGAACGGTGGTCAGTGTGCGAAATGGAGTGAGCTTGCATGAC
TGCCTTATGAAAGCACTCAAGGTGAGGGGCCTGCAACCGGAGTGCTGTGCAGTGTTCAGA
CTTCTCCACGAACACAAAGGTAAAAAAGCACGTTTAGATTGGAATACTGATGCTGCCTCA
TTGATTGGAGAAGAACTTCAAGTAGATTTCCTGGATCATGTTCCTCTCACAACACACAGC
TTTGCTCGGAAGACCTTTCTGAAGCTTGCCTCTTGTGACATCTGTCAGAAGTTCTTGCTA
AATGGATTTCGATGTCAGACTTGTGGCTACAAATTTCATGAGCACTGTAGCACCAAAGTA
CCTACGATGTGTGTGGACTGGAGTAATATCAGACAACTCTTATTGTTTCCAAATTCCACT
TTTGGTGATAGTGGAGTCCCAGCACTGCCTTCCTTGACAATGCGTCGGATGCGAGAGTCT
GTTTCCCGGATGCCTGTTAGTTCCCAGCACAGATACTCCACGCTCCACGCCTTCACACTC
AACATCTCCAGTTCCTGCTCTGAAGGTTCCCTCTCCCAGAGGCAGAGGTCAACGTCCACA
CCTAATGTCCACATGGTCAGCACCACCCTGCCTGTGGACAGCAGGGTGATTGAGGATGCA
ATTCGAAGTCACAGTGAATCAGCTTCACCTTCAGCCTTGTCTAGCAGCCCCAACAATCTG
AGCCCAACGGGCTGGTCACAGCCTAAAACCCCTGTGCCAGCACAGAGAGAGCGGGCACCA
GGATCCGGGACCCAGGAGAAAAACAAAATTAGACCTCGTGGTCAGAGAGATTCAAGCTGT
TACTGGGAAATAGAAGCCAGTGAAGTGATGCTCTCCACTCGGATTGGGTCAGGCTCCTTT
GGAACTGTGTATAAGGGCAAATGGCACGGAGACGTTGCAGTGAAAATCTTAAAGGTTGTT
GACCCCACATCAGAGCACTTCCAGGCATTCAGGAACAAGGTGGCTGTCCTGCATAAAACA
CGGCACGTGAACGTCCTGCTCTTCATGGGGTACATGACGAAGGATAACCTGGCAATTGTG
ACCCAGTGGTGTGAGGGCAGCAGCCTCTACAAACACTTGCATGTCCAGGAGACCAAGTTC
CAGATGTTCCAGTTGATTGACATCACCCGGCAGACAGCTCAGGGAATGGACTATTTGCAT
GCAAAAAACATCATCCACAGAGATATGAAGTCCAAAAATATATTTCTCCACGAAGGCCTG
ACGGTGAAAATTGGAGACTTTGGTTTGGCAACAGTCAAGTCGCGCTGGAGTGGTTCTCAG
CAGGTTGAACAACCCACTGGCTCTGTCCTGTGGTTGGCCCCAGAGGTGATCCGAATGCAG
GATAATAACCCGTTCAGCTTCCAGTCCGATGTCTACTCCTATGGCATTGTACTGTATGAG
CTCATGACAGGGGAACTGCCTTACTCCCACATCAACAACCGAGATCAGATCCTCTTCATG
GTGGGCCGAGGATATGCCTCCCCAGACCTTAGTAAGCTATACAAGAACTGCCCCAAAGCA
GTGAAGAGGCTTGTGGCTGACTGCGTGAAGAAAGTTAAGGAGGAGAGGCCTCTTTTTCCC
CAGATCTTGTCTCCCGTTGAGTTGCTCCAACACTCTCTACCGAAAATCAACCGGAGTGCT
TCTGAGCCATCCCTGCATCGGGCGGCCCACACCAAGGACATCAATGCCTGCACGTTGACC
ACGTCCCCTAGACTACCTGTCTTCTAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.64
SRP021940_cerebellum 0.75
SRP021940_embryo 4.38
SRP021940_placental_villous 1.52
SRP021940_synovial_membrane 2.84
SRP021940_testis 2.14

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LSSSPNNLSPTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSYYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTPEQFQAFRN
LSSSPNNLSPTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSS.YWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPT.E.FQAFRN
Retrocopy
LSSSPNNLSPTGWSQPKTPVPAQRERAPGSGTQEKNKIRPRGQRDSSCYWEIEASEVMLSTRIGSGSFGTVYKGKWHGDVAVKILKVVDPTSEHFQAFRN


Parental protein
EVAVLRKTRHVNILLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDIARQTAQGMDYLHAKNIIHRDMKSNNIFLHEGLTVKIGDFGLATV
.VAVL.KTRHVN.LLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDI.RQTAQGMDYLHAKNIIHRDMKS.NIFLHEGLTVKIGDFGLATV
Retrocopy
KVAVLHKTRHVNVLLFMGYMTKDNLAIVTQWCEGSSLYKHLHVQETKFQMFQLIDITRQTAQGMDYLHAKNIIHRDMKSKNIFLHEGLTVKIGDFGLATV


Parental protein
KSRWSGSQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQIIFMVGRGYASPDLSKLYKNCPKAMKRLVADCVKKV
KSRWSGSQQVEQPTGSVLW.APEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI.FMVGRGYASPDLSKLYKNCPKA.KRLVADCVKKV
Retrocopy
KSRWSGSQQVEQPTGSVLWLAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQILFMVGRGYASPDLSKLYKNCPKAVKRLVADCVKKV


Parental protein
KEERPLFPQILSSIELLQHSLPKINRSASEPSLHRAAHTEDINACTLTTSPRLPVF
KEERPLFPQILS..ELLQHSLPKINRSASEPSLHRAAHT.DINACTLTTSPRLPVF
Retrocopy
KEERPLFPQILSPVELLQHSLPKINRSASEPSLHRAAHTKDINACTLTTSPRLPVF


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide