RetrogeneDB ID:
retro_ecab_470
Organism:
Horse ( Equus_caballus )
Location:
19:14204673-14205023 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
99.17 %
Frameshifts:
3
Stop codons:
3


Parental gene:
Parental gene symbol:
ANAPC15
Parental gene aliases:
No gene alias available
Parental gene description:
anaphase promoting complex subunit 15 [Source:HGNC Symbol;Acc:24531]

Genomic region (view in browser)





>retro_ecab_470
ATGTCCACCTTATTGCCCTCACTCTTGCCCCATGTGACTGAGATACTGTGGTTTAATCTG
GATTGGCCCTGTGTGGAGGAGAGAGCTGCAGCAGCAGGAACAACAGCAAGCCTGACTCTA
GAGCACCATAGAGAAAAACAACAACTTGGTATCTATTGACAAGCCCGTGTCAGAGCACTA
TGATGACAAGAAAGGGGAGGAGGATGAAGGTGAAGGGATAGCGAAGACTCAGAGGATGAT
GAGGACATCAGGATATGGATGAGATAAGTGATTACAGTGAGTAGCCTGATGATGGAGAGG
TCATTGAGGTGGACATGGAAGGCAACAAACAGGATCAGGACCAGTGGATA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MSTLFPSLFPRVTETLWFNLDRPCVEETEL-QQQEQQHQAWLQSIAEKDNNLVPIGKPASEHYDDEEEEDEDDD-EDSEEDSEDDEDM-QDMDEMNDYNE
MSTL.PSL.P.VTE.LWFNLD.PCVEE....QQ..Q..QA.L.S..EK.NNLV.I.KP.SEHYDD...E.......DS.EDSEDDED..QDMDE..DY.E
Retrocopy
MSTLLPSLLPHVTEILWFNLDWPCVEERAA\QQEQQ--QA*L*STIEKNNNLVSIDKPVSEHYDDKKGEEDEGE/RDS-EDSEDDEDI/QDMDEISDYSE


Parental protein
SPDDGEVNEVDMEGNEQDQDQWM
.PDDGEV.EVDMEGN.QDQDQW.
Retrocopy
*PDDGEVIEVDMEGNKQDQDQWI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide