RetrogeneDB ID:
retro_ecab_471
Organism:
Horse ( Equus_caballus )
Location:
19:18588147-18588681 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.4 %
Coverage:
100.0 %
Frameshifts:
0
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL11
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L11 [Source:HGNC Symbol;Acc:10301]

Genomic region (view in browser)





>retro_ecab_471
ATGGCACAGGATCAGGGTGAAAAGGAGAATCCCATGTGGGAACTTCGCATCTGCAAGCTC
TGCCTCAACATCTATTGGGTGGAGAGTGGAGACAGACTGACCTGGGCAGCAAAGGTGCTG
GAGTAGCTCACAGGCCAGACCCCTGTGTTTTCCAAAGCTAGATACACCATCAAATTATTT
GGCATTAGGAAAAATGAAAAGATTGCCATCTACTGCATGGTCTGTGGGGCCAAAGCAGAA
GAAATCCTGGAGAAAAGTCCAAAGTCGTGGGAGTATGAGTCAAGAAAAAATAGCTTCTCA
GATACTGGAAACTTTGGTTTGGGGATCCAAGAACACATCAATCTGGGGATCAAATATGAC
CCAATCATTGGTATCTAGAGCCTGGACTTCTACGTGGCGCTGAGTAAGCCATGTTTCACC
ATCACGGACAAGAAGTTCAGGACAGGTTGCATTGGGGCCAAACACAGAAATAGCAAAGAG
GAGGTCATGCCCTGGTCCCAGCAGAAGTATGGTGAGGTCATCCTTCCTGGCAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LQQDQGEKENPMRELRIRKLCLNICVGESGDRLTRAAKVLEQLTGQTPVFSKARYTVRSFGIRRNEKIAVHCTVRGAKAEEILEKGLKVREYELRKNNFS
..QDQGEKENPM.ELRI.KLCLNI...ESGDRLT.AAKVLE.LTGQTPVFSKARYT...FGIR.NEKIA..C.V.GAKAEEILEK..K..EYE.RKN.FS
Retrocopy
MAQDQGEKENPMWELRICKLCLNIYWVESGDRLTWAAKVLE*LTGQTPVFSKARYTIKLFGIRKNEKIAIYCMVCGAKAEEILEKSPKSWEYESRKNSFS


Parental protein
DTGNFGFGIQEHIDLGIKYDPSIGIYGLDFYVVLGRPGFSIADKKRRTGCIGAKHRISKEEAMRWFQQKYDGIILPGK
DTGNFG.GIQEHI.LGIKYDP.IGI..LDFYV.L..P.F.I.DKK.RTGCIGAKHR.SKEE.M.W.QQKY...ILPGK
Retrocopy
DTGNFGLGIQEHINLGIKYDPIIGI*SLDFYVALSKPCFTITDKKFRTGCIGAKHRNSKEEVMPWSQQKYGEVILPGK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide