RetrogeneDB ID:
retro_ecab_473
Organism:
Horse ( Equus_caballus )
Location:
19:25035044-25035379 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.42 %
Coverage:
77.93 %
Frameshifts:
1
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_473
ATGAAGTTTAATCCCTCTATAATTTCTAACTAGAGCAGGAGCCCTAAAAGGCATTTCGAT
GTACCTTCCCACAGTCATGGAAGATTGCTTTCCCCTCTTTCCAAGTTGCTGAGACAGAAG
TACAATGTTCAATCCATGCCCATCTGAAAGGATGTTGTGGTGCAATTTGTGTAAGGACAC
TACAAAGGTCAACAAACTGGCAAGGTGGTCCAGGTGACAGGAAGATATATGTCATACATA
CTGAATAAGTGCAGCAGGAGAAGGCTAATGACACCACTACCCACATGGGCATTCACCCCA
GCAAGGTGGTTATCACTAGGCTAAAACTGAAAAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKFNPFVTSDRSKNRKRHFNAPSHIRRKIMSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQQIGKVVQVY-RKKYVIYIERVQREKANGTTVHVGI
MKFNP...S..S...KRHF..PSH......S.PLSK.LRQKYNV.SMPI.KD..VQ.V.GHYKGQQ.GKVVQV..RK.YVI..E.VQ.EKAN.TT.H.GI
Retrocopy
MKFNPSIISN*SRSPKRHFDVPSHSHGRLLS-PLSKLLRQKYNVQSMPI*KDVVVQFV*GHYKGQQTGKVVQVT/RKIYVIHTE*VQQEKANDTTTHMGI


Parental protein
HPSKVVITRLKLDK
HPSKVVITRLKL.K
Retrocopy
HPSKVVITRLKLKK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide