RetrogeneDB ID:
retro_ecab_475
Organism:
Horse ( Equus_caballus )
Location:
19:34821932-34822340 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
72.86 %
Coverage:
83.03 %
Frameshifts:
3
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_475
CTGGTGCCCCAGATCGGCCCCCTGGGTCTGTCTCCAAAAAAGCTGGTGATGACATTGCCA
AGGCAACCAGTAATCGGAAGGGGTCGAGGATTATAGCAAAACTGACCATCCAGAAACACC
AGCTTAGATTGAGGTGGTACTGTCTGCCTCTGCCCTGTCATCAAAGCCCTCAGGGAACCG
CCAGGAGACAGAAACAAGCAGAAAAACATTAACCTCAGCGGAAATCTCACTTTTGATGAG
ATTGTCAACATTGCCTGACAGATCCAGCACCAAACTTTAGCTAGAGAACTGCCTGGAACC
ATTACAAGGGTCCTGGGAACTGCCCAGTCTGTGGGCTGCAATGTTGAAGGCCACCACCCT
TGTGACATCATAGATGACATCAACAGTGGTGCGGTGGAATGCCCAGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 1.16
SRP021940_cerebellum 0.25
SRP021940_embryo 0.24
SRP021940_placental_villous 1.03
SRP021940_synovial_membrane 2.16
SRP021940_testis 0.59

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LAPKIGPLGLSPKKV-GDDIAKATGDWKGLRITVKLTIQNRQAQ-IEVVPSASAL-IIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRSLARE
L.P.IGPLGLSPKK..GDDIAKAT...KG.RI..KLTIQ..Q...IEVV.SASAL..IKAL.EPP.DR.KQKNI..SGN.TFDEIVNIA.Q..H..LARE
Retrocopy
LVPQIGPLGLSPKKL/GDDIAKATSNRKGSRIIAKLTIQKHQLR/IEVVLSASAL/VIKALREPPGDRNKQKNINLSGNLTFDEIVNIA*QIQHQTLARE


Parental protein
LSGTIKEILGTAQSVGCNVDGRHPHDVIDDINNGAVECPA
L.GTI...LGTAQSVGCNV.G.HP.D.IDDIN.GAVECPA
Retrocopy
LPGTITRVLGTAQSVGCNVEGHHPCDIIDDINSGAVECPA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide