RetrogeneDB ID:
retro_ecab_476
Organism:
Horse ( Equus_caballus )
Location:
19:48221207-48221645 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.79 %
Coverage:
73.04 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
PSMB3
Parental gene aliases:
No gene alias available
Parental gene description:
proteasome (prosome, macropain) subunit, beta type, 3 [Source:HGNC Symbol;Acc:9540]

Genomic region (view in browser)





>retro_ecab_476
AAGGCCTAGATGTTGACCACAGACTTGCAGAAGATCTTTCCCATGGGCGAATGGCTGGAC
ATCAGCCTGACTGGGCTCGCCACCAACTTCCAGACCACTGCTCAGCACCTCAAGTTCCAG
CTGAACCTGTGTGAGCTGAATGAAGGTTCGCAGATCAAGCCTTACACCCTCATGAGCGTG
ATGGCCAACCTCTTGTACAAGAAACAGTTTGGCCCCTGCTACACCGAGCCAGTCATTGCT
TGGCTGGACCTGAAGACCTTTACGCCCTTCCTTTGCTCTCTAGACCTCATCAGCTGCCCT
GTGGTGACTGACGACTTTGTGGTCAGCAGCACCTGTGCTGAACAAATGTGCGGGATGTGT
GAGTCTCTGGGAGCCCATCATGCACACCTGTTGGAGACCGTCTCACAAGCCATGCTGAAT
GCTGTGGATGGGGATGCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.17
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
QAQMVTTDFQKIFPMGDRLYIGLAGLATDVQTVAQRLKFRLNLYELKEGRQIKPQTLMSMVANLLYEKRFGPYYTEPVIAGLDPKTFKPFICSLDLIGCP
.A.M.TTD.QKIFPMG..L.I.L.GLAT..QT.AQ.LKF.LNL.EL.EG.QIKP.TLMS..ANLLY.K.FGP.YTEPVIA.LD.KTF.PF.CSLDLI.CP
Retrocopy
KA*MLTTDLQKIFPMGEWLDISLTGLATNFQTTAQHLKFQLNLCELNEGSQIKPYTLMSVMANLLYKKQFGPCYTEPVIAWLDLKTFTPFLCSLDLISCP


Parental protein
MVTDDFVVSGTCTEQMYGMCESLWEPNMDPEHLFETISQAMLNAVDRDA
.VTDDFVVS.TC.EQ...MC...........HL.ET.SQAMLNAVD.DA
Retrocopy
VVTDDFVVSSTCAEQ---MCGMCESLGAHHAHLLETVSQAMLNAVDGDA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide