RetrogeneDB ID:
retro_ecab_478
Organism:
Horse ( Equus_caballus )
Location:
19:51199169-51199507 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.35 %
Coverage:
60.64 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
RPL18
Parental gene aliases:
No gene alias available
Parental gene description:
60S ribosomal protein L18 [Source:RefSeq peptide;Acc:NP_001182442]

Genomic region (view in browser)





>retro_ecab_478
CTGAAACGACAAGAACCCAAGAGCGGGACATCTACTGAAGGCTGTTGGTCAACCGGTCCA
GGTTTCCCACCAGAGAAGCCAACTCCACTTTCAACCAAGTTGTGCTGAAGTTGTTCATGA
GTCGCACCAACTGGCCGCCCCCGTGTCTCTCCCAGATGATCCGGAAAGTGAAGGCTTCTG
ACCGGGAGGACAAAACAGCTGTGCTTGTAGGGACTAAATCAGACGACGTGCGTGTCCAGG
AGGTGCCGAAACTGCCAGTGTGTGCGCACTGCGCAAAGCAGCGGCGCCGGAATCGCATCC
TCACCGACTGGGGCAAGATCCGCATCTCCCACCAGCTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VRRKEPKS-QDIYLRLLVKLYRFLARRTNSTFNQVVLKRLFMSRTNRPPLSLSRMIRKMKLPGRENKTAVVVGTITDDVRVQEVPKLKVCALRVSSRARS
..R.EPKS..DIY.RLLV...RF..R..NSTFNQVVLK.LFMSRTN.PP..LS.MIRK.K...RE.KTAV.VGT..DDVRVQEVPKL.VCA.....R.R.
Retrocopy
LKRQEPKS/RDIY*RLLVNRSRFPTREANSTFNQVVLK-LFMSRTNWPPPCLSQMIRKVKASDREDKTAVLVGTKSDDVRVQEVPKLPVCAHCAKQRRRN


Parental protein
RILKAGGKILTFDQL
RIL...GKI....QL
Retrocopy
RILTDWGKIRISHQL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide