RetrogeneDB ID:
retro_ecab_48
Organism:
Horse ( Equus_caballus )
Location:
X:73883950-73884157 (-)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
88.24 %
Coverage:
73.91 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_48
ATGGTGAAGAAGATTGAAATCAGCCAGCACGCCAAGCAAACTTGCTCCTTCTGTGGGAGA
ACCAAGATGAAGAGGCGAGCTGTGGGGATCTGGCACTGTGGTTCCTGCATAAAAACAGTA
GCCGGGCGTGTCTGGACCTACAACACCAGTTCTGCCATCACACTGAAGTCTGCCATCCGA
AGACTGAAGGAATTGAAAGACCAGTAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVKKIEISQHAKYTCSFCGKTKMKRRAVGIWHCGSCMKTVAGGAWTYNTTSAVTVKSAIRRLKELKDQ
MVKKIEISQHAK.TCSFCG.TKMKRRAVGIWHCGSC.KTVAG..WTYNT.SA.T.KSAIRRLKELKDQ
Retrocopy
MVKKIEISQHAKQTCSFCGRTKMKRRAVGIWHCGSCIKTVAGRVWTYNTSSAITLKSAIRRLKELKDQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide