RetrogeneDB ID:
retro_ecab_480
Organism:
Horse ( Equus_caballus )
Location:
2:4283869-4284363 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
61.58 %
Coverage:
55.7 %
Frameshifts:
9
Stop codons:
1
Parental gene:
Parental gene symbol:
GPS2
Parental gene aliases:
No gene alias available
Parental gene description:
G protein pathway suppressor 2 [Source:HGNC Symbol;Acc:4550]
Genomic region (view in browser)
>retro_ecab_480
TCAGCACGCGGGAGCCCTGGAGGATGCCATAGCCCAGTGCCCTCACGGCAGCCGACAGAG
CCAAACAGATGTTTGGACCCAAGTGCTTCCAACCCAGCACTATATGGGCTCAGCAGCTGC
TTTCGAGAGACCGCAGAACACGGGCAATACCAAGACAGCCCAGGCACGCCCATGGACTGC
TCAGCCCCAGCTCACCACACACCCGCCCAGCCAGCCCATAGTCCTGGTCAGCAGCTCAGA
GCACACGTAAGTGCTTCCTGCAGCACGGTGCCCATCTCAGCCTCAGTCGCAGCCACCGCC
CCGTGCTGTGCATGGCCACTTTCAGCCCACCAGACAGGGCTCCTGCAGCCTGCCGGGGCC
CCATCCTTGCAGAAGCAGATGGATGTGCCAACCAGTGGACTGGCTTCTCTGACTTATCCT
CCCTGTGCCCCACACACCCCAGCTCTGCATCCAGCCCCTGGGTTCCTTCCGACCCCTAGC
CCCCTGTGCAGATG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.12 |
| SRP021940_cerebellum | 0.1 |
| SRP021940_embryo | 0.26 |
| SRP021940_placental_villous | 0.22 |
| SRP021940_synovial_membrane | 0.16 |
| SRP021940_testis | 0.89 |
Parental protein coverage
Changes in the retrocopy sequence
