RetrogeneDB ID:
retro_ecab_482
Organism:
Horse ( Equus_caballus )
Location:
2:15041664-15042219 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
55.85 %
Coverage:
93.47 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_482
GAGAGAATTAAGATTTTTTTTTTAAATGAAGAAGCTCTATGAGAACTATCTGACTCCATT
AGAAAAGGAAACATAAGGATAATGGGTATCCAAGAAGAAGAGAGAGAGAAGGGAGCAAAG
AGCTTATTTAAAGAAATAATAGCTGAGAACTTCCAAAACCTGGCGAAGGAACTAGATATA
TAAGTACATGAAGCTAACAGAAACCTAATTATCTTAACACAAAAAGACTTTCTCCAAGAC
ACATTATTTTAAAACTGTCAAATGTCAATGATGAAGAAAGAATTTTAAAGGCAGCCAGGG
TAAAAAACAGAGTAGCCTACCACGGAACTCCCATTAGGCTATCAGTGGATTCCTCAGCAG
AAATTCTACTGGTCAAGAGAGTGGAATGACATACTCAAAATATTGAAAGATAAAAACTGT
CAGCCAAGAATACTCTGTCCAGTAAAGTTATCTTTCAGATATGAAGGAGAAATAAAGGTT
TTCCCAGACAAACAAAAGCTGAGGGAGTTCATCACCATTAGACCTGCCTTATCAGAAATG
TTGAACGCAGCTCTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.36

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
ERELRLKRSEDIFQEIYNPIRKRNIRIISIPTGEERQNRRESLFKEIITENFLNLGKGLEIQVKEANRT-PNYINVERPSPRHILVKLAKLVMKEYIMAE
ER.......E....E....IRK.NIRI..I...EER.....SLFKEII.ENF.NL.K.L.I.V.EANR..PNY.N..R.SPRHI..KL......E.I...
Retrocopy
ERIKXXXXNEEAL*ELSDSIRKGNIRIMGIQE-EEREKGAKSLFKEIIAENFQNLAKELDI*VHEANRN/PNYLNTKRLSPRHIILKLSNVNDEERILKA


Parental protein
AARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTAL
A.......Y.G.PIRLS.D.S.Q.....REWNDI.KILK.KN..PRIL.PVKLSFRY..EIK.F.DKQKLREFIT.RP.L.EM...AL
Retrocopy
ARVKNRVAYHGTPIRLSVDSS\QKFYWSREWNDILKILKDKNCQPRILCPVKLSFRYEGEIKVFPDKQKLREFITIRPALSEMLNAAL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide