RetrogeneDB ID:
retro_ecab_483
Organism:
Horse ( Equus_caballus )
Location:
2:31021447-31021786 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
76.99 %
Coverage:
50.45 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
C14orf166
Parental gene aliases:
No gene alias available
Parental gene description:
chromosome 14 open reading frame 166 [Source:HGNC Symbol;Acc:23169]

Genomic region (view in browser)





>retro_ecab_483
CGGCACCCATCCAGCAGAGACTGGCCCAAGTTCTTTGAAAAATATCTCAGATATGTTAAC
TGTCTTTTGAAGATTCAAGATCAACAAGAAGCATTTGACTGGCTTCTTGGTTTAGCTGTC
AGACTTGAATATGGAGATAATGCTGAAAAATACAAGGACTTGGTAACTGATAGTGCAACA
ACTGCTGACAATGCAACTAAAAATGCAGAGCCATTGATCAGTTTGGATGTAAATAATCCT
GATTTTCAGTCTAGTGTAATAGCTTTGGCTAATCTTCTTCAGATTCAGCAGCAAGATGAT
TATCCGGTAACGCTTGAGGCAATCTGCATTTTGGTCCAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RNIHSSDWPKFFEKYLRDVNCPFKIQDRQEAIDWLLGLAVRLEYGDNAEKYKDLVPDNTKNADNAAKNAEPLINLDVNNPDFKAGVMALANLLQIQRHDD
R...S.DWPKFFEKYLR.VNC..KIQD.QEA.DWLLGLAVRLEYGDNAEKYKDLV.D....ADNA.KNAEPLI.LDVNNPDF...V.ALANLLQIQ..DD
Retrocopy
RHPSSRDWPKFFEKYLRYVNCLLKIQDQQEAFDWLLGLAVRLEYGDNAEKYKDLVTDSATTADNATKNAEPLISLDVNNPDFQSSVIALANLLQIQQQDD


Parental protein
YLVMLKAIRILVQ
Y.V.L.AI.ILVQ
Retrocopy
YPVTLEAICILVQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide