RetrogeneDB ID:
retro_ecab_484
Organism:
Horse ( Equus_caballus )
Location:
2:31139846-31140362 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.71 %
Coverage:
67.19 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_484
AGAGAACTGACACTAAAAAGAAATGAAGAAAGTCTCCAAGAAATATCCAACTCAATTAGG
AAATGCAACATGAGAATTATAGGTATTCGAGAAGGAGAAGAGAAGGAGAATGTAGGAGAA
AGCCTGTTCAAAGAAACAGCAGAGAACTTCCCAAACCTGGGGAAGGAGATGGAAATCCAC
GTGAAAAAGGCTACCAGACTTCCTAAATACGTCAATGTAAAAAGACCTACTGCAAGGCAT
ATAGTAGTGAAACTCGCAAAGTTGAATGACAAAAAATACTAAGGGCAGCAAGGCAGAAGA
AAACAACTTAGAAAGGAACCGCTATCAGGCTTTCAGTGGATTTCTCTGCAGAAACCTTAC
AGGCTAAGAGGGACTGGAATGACATATTCAAATCTTTGAAAGACAGAAAATTTCAGCCAA
GAATACTCTATCCAGCAAAAAATATCCTTCAGATATGATGGAGAAATAAAAACTTTCCCA
GATAAACGAAAGCTAAGGGAGTTCATAGCCACAAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KEKKIQKEGENFQETTDSMRKCNIRIIRIPEGDEKENGTESVLKGIIAENFPDLENETETRVEEAFRSPRYVNVKRTTARHIVVKLAKLND-ERILRAAR
.E.......E..QE...S.RKCN.RII.I.EG.EKEN..ES..K...AENFP.L..E.E..V..A.R.P.YVNVKR.TARHIVVKLAKLND...ILRAAR
Retrocopy
RELTLKRNEESLQEISNSIRKCNMRIIGIREGEEKENVGESLFKET-AENFPNLGKEMEIHVKKATRLPKYVNVKRPTARHIVVKLAKLND/QKILRAAR


Parental protein
QKKITYKGTPLRLSVDFSVETLQAWRDWNDILKTLKDNNLQPRILYPA-KISFRYEGE-KSFLDKQKLRDFTAMR
QKK.T.KGT..RLSVDFS.ETLQA.RDWNDI.K.LKD...QPRILYPA.KISFRY.GE.K.F.DK.KLR.F.A.R
Retrocopy
QKKTT*KGTAIRLSVDFSAETLQAKRDWNDIFKSLKDRKFQPRILYPA\KISFRYDGEIKTFPDKRKLREFIATR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide