RetrogeneDB ID:
retro_ecab_486
Organism:
Horse ( Equus_caballus )
Location:
2:46636876-46637758 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.85 %
Coverage:
99.31 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_486
AAAGAGAGGAATATGTTCCAAATTAAAGAACAAGGTAAAACGTCAGAGAAAAACCTTAAT
GAAATGATGACAAGCGATTTACCTGATAAAGAGCTCAGGGTTATGGTCAAAAAGATGCTC
ACTGAACTGAGGAGGAGGTGGATGAACACAAGGAGAGCTTTGACAAAGAGAAAGAAAATA
TAAGAAAGTACCAAACAGAAGTCACAGAGCTGAAGAATCCAATAACTGAAATGAAAACTA
CAACAGAAGGGTTCAACATCAGACTAGATGAAGCAGAAGAAAGGATCAGTGGAGTCAAAG
ACAGGGCATAGAACTCACCGAATCAGAGTGGTAAAAGGAAAAAAGAATGAAAAAACGTGA
AAATAGGAACTTACGGGACAACATCAAACAGACTAACACTTGCATTATAGGGCTCCCACA
AGGATAAGAGAGAGAAAGGGGCCAAAATCTTATCTGAAGAAATAATGGCTGAAAACTTCC
CTAAGCTGGGGAAGGACACAGACATTCAGATCCAGGAAGGCCAGAAAGTTACAAATAAGA
TAAACCCAAAGAGACCCACACCAACACACATTATAGTTAAGATGTCAGAAGTTAAAGATG
AGGAGAGAATCTTAAAAGCAGCAAGAGAGAAACAACTCGTTAGGTACGAAGGAGTCCCCA
TAAGACTATCAGCAGACTTTCCAGCGGGGACTTTACAAGCCAGAAGGGAGTGTCACAAAA
TATTCCAAGTGCTGAAAGAAAAAATTCCGACCAAGAGTAGTCTACTTGGTAAGGTTATCA
TTCAGAATTGAAGGAGAGATAAAGAGTTTCCCAGACAAGCAAAAGCTAAAGGAGTTCATC
ACCACGAAACAAGCCTTGCAAGAAATGTCAAAGGGACTCCTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKVK-LLTDLGRR-MDEHSENFNKELENIKKQ----SEMKNTIMEMKNSLEGLNSRVDDTEERISKL
..R..FQ.KEQ.KT.EK.LNE...S.LPDK.....VK..LT.L.RR..DEH.E.F.KE.ENI.K......E.KN.I.EMK...EG.N.R.D..EERIS..
Retrocopy
KERNMFQIKEQGKTSEKNLNEMMTSDLPDKELRVMVKKMLTELRRR/VDEHKESFDKEKENIRKYQTEVTELKNPITEMKTTTEGFNIRLDEAEERISGV


Parental protein
DERL-EEVTQAEQIKEKMKKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAEIYLIKI-AENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISN
..R...E.T..E............R.L.DNIK.T...I.G.P......KGA.I....I.AENFPKL.K..D.Q.QE.Q...N.INPKR.TP.HII.K.S.
Retrocopy
KDRA/IELTESEWXXXXXXXXXXXRNLRDNIKQTNTCIIGLPQ\DKREKGAKILSEEIMAENFPKLGKDTDIQIQEGQKVTNKINPKRPTPTHIIVKMSE


Parental protein
PGRNKERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKKP-PRILYLARSSFIMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
.....ERILKAARE.Q.V.Y.G..IRLSAD..A.TLQARR..H.IF.VL..K.P.PR..YL.R.SF..EGEIK.FPDKQKLKEFIT.K.ALQEM.KGL.
Retrocopy
V-KDEERILKAAREKQLVRYEGVPIRLSADFPAGTLQARRECHKIFQVLKEKIP\PRVVYLVRLSFRIEGEIKSFPDKQKLKEFITTKQALQEMSKGLL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide