RetrogeneDB ID:
retro_ecab_487
Organism:
Horse ( Equus_caballus )
Location:
2:48707307-48707705 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.18 %
Coverage:
77.65 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_487
ATTAGAGTATAAAAAGACTTGGTGAGAGGAATGGATGAACACAGTGAGAACTTCAACAAA
GAGACAGAAAGTATAAGAAAGTAAGAATAGAAGTCACAGAGGTGAAGAATACAATAACTG
AACTGAAGAGTACGTGGGAGGGGCTCAATAGCAGACTAGGCGAAGCAGGAGAAAGGACCA
GTGAAATCGAAGACAAGGCAGCGGAACTCACCCAATCAGAGCACCAAAAGGAAAAAAGAA
TGAAAAAAAGTGAAGCCAGCTTCAGGGACTTATGGGACAACATCAAACAGACTAACACTT
GCATTATAGGAGTCCCAGAAGGAGAAGAGAGAGAGAAAGGGGCAGAAAACTTATTTGAAG
AAATAATGGCTGAAAACTTCCCTAATCTGGGGAAGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.15
SRP021940_embryo 0.07
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IKMLTKLKRRMDEHSGNFNKETDSIRK-CQIEVTELKNTIPELTNTLEGFNSRLDEAEERISELNDRA-ELTQSEQQKEKRMKNTDNSLRELWDNIKHAN
I.....L.R.MDEHS.NFNKET.SIRK...IEVTE.KNTI.EL..T.EG.NSRL.EA.ER.SE..D.A.ELTQSE............S.R.LWDNIK..N
Retrocopy
IRV*KDLVRGMDEHSENFNKETESIRK/VRIEVTEVKNTITELKSTWEGLNSRLGEAGERTSEIEDKAAELTQSEHXXXXXXXXXEASFRDLWDNIKQTN


Parental protein
IRIIGVPEGEERDKGAENLFVEIIQENFPNLRKE
..IIGVPEGEER.KGAENLF.EI..ENFPNL.KE
Retrocopy
TCIIGVPEGEEREKGAENLFEEIMAENFPNLGKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide