RetrogeneDB ID:
retro_ecab_488
Organism:
Horse ( Equus_caballus )
Location:
2:51057741-51058143 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
77.54 %
Coverage:
72.97 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RPL17
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L17 [Source:HGNC Symbol;Acc:10307]

Genomic region (view in browser)





>retro_ecab_488
ATGGTTTGCTATTCATTTGACACAGAAAACCCCCCAAAATCATGCAAGTCAAGAGGTTCA
GATCTTTGTGTTCATTTTAAGAACACTTTTGAAATGGCCCAGGCCATCAAGGGTATGCAT
ATCCAAAAGCCACCAAGTATCTGAAGGATGTCACTTTACAGAAGTGATGTGTGCCATGTC
GTCGTTACAATGGTGGAGCTGGTAGGTGAGCCCAGGCCAAACAGTGGGGCTGGACCCAGG
GTCAGTGCCCCAAAAAGTGCTGAATTTTTGCTGCACATGCTTAAAAACACAGAAAGTAAT
GCTGACCTTACGGGATTAGATGTCGATTCTCTGGTCATCGAGCACATGCAGGTGGACAAG
GTGCCCAGGATGCGGTTCAGACCTTACAGAGCTGCAGGTCAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MVRYSLDPENPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRK-ATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWTQ-GRWPK-KSAEFLLHMLKN
MV.YS.D.ENP.KSCKSRGS.L.VHFKNT.E.AQAIKGMHI.K.ATKYLKDVTL.K.CVP.RRYNGG.GR.AQAKQWGWTQ.G..P..KSAEFLLHMLKN
Retrocopy
MVCYSFDTENPPKSCKSRGSDLCVHFKNTFEMAQAIKGMHIQK/ATKYLKDVTLQK*CVPCRRYNGGAGR*AQAKQWGWTQ/GSVPQ/KSAEFLLHMLKN


Parental protein
AESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGR
.ESNA.L.GLDVDSLVIEH.QV.K.P.MR.R.YRA.G.
Retrocopy
TESNADLTGLDVDSLVIEHMQVDKVPRMRFRPYRAAGQ


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide