RetrogeneDB ID:
retro_ecab_491
Organism:
Horse ( Equus_caballus )
Location:
2:62757699-62758126 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.11 %
Coverage:
82.94 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_491
ATGAAGAAACAGAGGAATATCTTCAAAATGACAAAACAAGATCAAACCCCAGAAAAAAAC
CTTAATGAAACAGAGATAAGCAATTTACCTGATAAAGAGTTCAAAGTAGTGGTCATAAAG
ATGCTCATTGAACTCAAGAGAAGAATGGATGCACACAGTGAGAACTTCAACAAAGAGATA
GAAAATATAAGAAAGTACCATACAGGAGGTATGGAGATGAAAAATACAATAGCTGAACTG
AAAAATACACTAGAAGCATTCAACAGCAGACTAGATGAAGCAGAATAAAGGAACAGTGAC
CTGGAAGGCAGAGCAGTGGAACTAACACAAACAGCAGCAGAAGAAAAAAGATTAAAAAAA
AAATGAAGATAACTTAAGGAACCTCTGGAACAATATGAAGTGGAATAACGTTTGCATTAT
AGGGGTT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKKQGNMFQMKEQDK-PENNLNEMEVSNLPNKEFQVKVIKMLTKLKRRMDEHSGNFNKETDSIRKCQIEVTELKNTIPELTNTLEGFNSRLDEAEERISE
MKKQ.N.F.M..QD..PE.NLNE.E.SNLP.KEF.V.VIKML..LKRRMD.HS.NFNKE...IRK......E.KNTI.EL.NTLE.FNSRLDEAE.R.S.
Retrocopy
MKKQRNIFKMTKQDQTPEKNLNETEISNLPDKEFKVVVIKMLIELKRRMDAHSENFNKEIENIRKYHTGGMEMKNTIAELKNTLEAFNSRLDEAE*RNSD


Parental protein
LNDRA-ELTQS-EQQKEKRMKNTDNSLRELWDNIKHANIRIIGV
L..RA.ELTQ...Q.........DN.LR.LW.N.K..N..IIGV
Retrocopy
LEGRAVELTQT\QQKXXXXXXXEDN-LRNLWNNMKWNNVCIIGV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide