RetrogeneDB ID:
retro_ecab_492
Organism:
Horse ( Equus_caballus )
Location:
2:64202769-64203598 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
68.66 %
Coverage:
53.98 %
Frameshifts:
6
Stop codons:
4


Parental gene:
Parental gene symbol:
G6PD
Parental gene aliases:
No gene alias available
Parental gene description:
glucose-6-phosphate dehydrogenase [Source:HGNC Symbol;Acc:4057]

Genomic region (view in browser)





>retro_ecab_492
AGTGAGCCCTTCTTCAGGGCCATCCCGGAGAAGCCCAAACTGGAGGAGTTCTTTGCCTGA
AACTCGGGTGTAGCTGGCATGTAGGAGGACGTGGCCTCCTACGAGTGTCTTAACAGCCAC
ATGAACACCCTTCACCAAGGGCCAAAAGCCAACTACCTCTTAAACCTGGCTTTGCCTTCA
ACCATCTATGAGGCTGTCACTAAGAACATCTGCAAGAACCGCATGATCCAGACAGACTGG
AACCACATCACCATGGAGTAGCCCTTTGGGAAGGACTGGTAGCACCCCATCAGCTGTCTA
CCCACATCTCCTCCATATTCCACAAGGACCAGATCTATTGCATCAGCCACTACTTAGGCA
AGGAGATGGTCCAGAACCTCATGGTGCTGAGGTTTGCCAACAGGATCTTTGGCCCCATCT
GGAGCCAGAACAATGTCACTTGCGTCATCCTTATTGTCAAGGAGCCCTTTGGCGCTGAGG
GCCATGGGGGGCTACCTTGATGAATTTGAGACATCCTAGACATGATGCAGAACCACCTCA
CACAGGTGCTATGTCTGGTGGCCATGGAGAAGCTCGCCTCCATGGACTCAGATGACGCAC
ATTACTAGAAGGTCAAAGTGTTCAAACGTTATCTCAAAAGTGCAGGTTAACAACATTGTC
CTGGGTCAGTATGTGGGGAACACCAACGAGAGGGCGAGGCCACCAAAGGGTACCTGGCTG
TCCCCACAGTGACCCACGGGTCCGCAACTGCCACCTTCACTGCTGTCGTCCTCTATGTAG
AGAATGAGAGGTGGGACAGGCGTCCTTCATCCTGTGCTTTGGCAAGGCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SEPFFKATPEEKPKLEEFFARNSYVAGQYDDSASYKRLNSHMNALHQGSQANRLFYLALPPSVYEAVTKNIHETCMSQTGWNRIIVEKPFGRD-LQSSDQ
SEPFF.A.PE.KPKLEEFFA.NS.VAG...D.ASY..LNSHMN.LHQG..AN.L..LALP...YEAVTKNI....M.QT.WN.I..E.PFG.D.L....Q
Retrocopy
SEPFFRAIPE-KPKLEEFFA*NSGVAGM*EDVASYECLNSHMNTLHQGPKANYLLNLALPSTIYEAVTKNICKNRMIQTDWNHITME*PFGKD/LVAPHQ


Parental protein
LSNHISSLFREDQIYRIDHYLGKEMVQNLMVLRFANRIFGPIWNRDNIACVILTFKEPFGTEGR-GGYFDEFGI-IRDVMQNHLLQMLCLVAMEKPASTD
LS.HISS.F..DQIY.I.HYLGKEMVQNLMVLRFANRIFGPIW...N..CVIL..KEPFG.EG..GGY.DEF...I.D.MQNHL.Q.LCLVAMEK.AS.D
Retrocopy
LSTHISSIFHKDQIYCISHYLGKEMVQNLMVLRFANRIFGPIWSQNNVTCVILIVKEPFGAEGH\GGYLDEFET/ILDMMQNHLTQVLCLVAMEKLASMD


Parental protein
SDDVRDEKVKVLK-CISEVQADHVVLGQYVGNPS-GEGEATKGYLDDPTVPRGSTTATFAAVVLYVENERWDGVP-FILRCGKA
SDD....KVKV.K..IS.VQ....VLGQYVGN....EGEATKGYL..PTV..GS.TATF.AVVLYVENERWD..P.FIL..GKA
Retrocopy
SDDAHY*KVKVFK\VISKVQVNNIVLGQYVGNTN/REGEATKGYLAVPTVTHGSATATFTAVVLYVENERWDRRP/FILCFGKA


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide