RetrogeneDB ID:
retro_ecab_493
Organism:
Horse ( Equus_caballus )
Location:
2:64966280-64966995 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
65.29 %
Coverage:
63.3 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
FADS1
Parental gene aliases:
No gene alias available
Parental gene description:
fatty acid desaturase 1 [Source:HGNC Symbol;Acc:3574]

Genomic region (view in browser)





>retro_ecab_493
GGTCAGCTGTCCTTCTTCAGCACCTCTACGTGGAACCACCTGCTACTTCATTTCCTCATT
GGCCACCTGAAGGGGCCCCTGCCTGTTAGTGGGACCACATGCACTTCCACCACCATGCCA
AGCCCAGTTGCTTCCACTAGAAGGCAGACATCAACATGAACCCCTTCTTTGCCTTGGGGA
AGATCCTCTCTGTGGAGCTTGGGAAACAAAAGAAAAAGCACATGCCATACAAACACCAGG
ACAAATGCTTCTTCCTGCTTGGGCCTCCAGCCTTGCTGCCTCTCTGCTTCCAGTGGGATA
TTTTCTATTTTGTTTTCAGTGGACGAAGCGGATGGACTTGACCTGGATGATCACCTTCTA
CACCTGCATCTTCCTTGCTTATGTGTCATTATTGGGACTGAAAGCCTTCCTGGACCTTTT
CTTCATGGTCAGATTCCTAGAAAGCAATTGATTTGTGTGGGTGACACAAATGAACCACGT
CCCCATGTACATTGATCACAACCGGAACATGGAGTGGGTCTCCACCCAGCTCCAGGCAAC
ACGCAACATCCACAAGTCTGCTTTCAGTGACTGGTTCACTAGATATCTCAACTTCCAGAC
TGAGTACTGTCTGGAATGCCTCACCACAGTTACCACAAAGCGATTCCCCTGGTGCAGTCC
CTGTGTGCCAAGCATGGCAGAGACTACTAGTCCAAGCCCCTGCTCTCAGCCTTTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
GHLSVFSTSTWNHLLHHFVIGQLKG-APASWWNHLHFQHHAKPNCFRKDPDINMHPFFFALGKILSVELGKQKKKYMPYNHQHKYFFLIGPPALLPLYFQ
G.LS.FSTSTWNHLL.HF.IG.LKG.APA..W.H.HF.HHAKP.CF....DINM.PFF.ALGKILSVELGKQKKK.MPY.HQ.K.FFL.GPPALLPL.FQ
Retrocopy
GQLSFFSTSTWNHLLLHFLIGHLKG/APAC*WDHMHFHHHAKPSCFH*KADINMNPFF-ALGKILSVELGKQKKKHMPYKHQDKCFFLLGPPALLPLCFQ


Parental protein
WYIFYFVI-QRKKWVDLAWMVTFYVRIVLTYVPLLGLKGFLGLFFMVRFLESNWFVWVTQMNHIPMHIDHDQNKDWFSTQLQATCNVHKSAFNDWFSGHL
W.IFYFV..Q..K..DL.WM.TFY..I.L.YV.LLGLK.FL.LFFMVRFLESN.FVWVTQMNH.PM.IDH..N..W.STQLQAT.N.HKSAF.DWF...L
Retrocopy
WDIFYFVF/QWTKRMDLTWMITFYTCIFLAYVSLLGLKAFLDLFFMVRFLESN*FVWVTQMNHVPMYIDHNRNMEWVSTQLQATRNIHKSAFSDWFTRYL


Parental protein
NFQIEHHL--FPTMPRHNYHKVAPLVQSLCAKHGIQYQSKPL
NFQ.E..L....T..........P.V.S..........S.PL
Retrocopy
NFQTEYCLECLTTVTTKRFPWCSPCVPSMAETTSPSPCSQPL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide