RetrogeneDB ID:
retro_ecab_494
Organism:
Horse ( Equus_caballus )
Location:
2:65896628-65897363 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
70.4 %
Coverage:
96.09 %
Frameshifts:
3
Stop codons:
1
Parental gene:
Parental gene symbol:
ATP5F1
Parental gene aliases:
No gene alias available
Parental gene description:
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit B1 [Source:HGNC Symbol;Acc:840]
Genomic region (view in browser)
>retro_ecab_494
ATGCTGTCCCACATGGTACTTTCTGCTGCCACCACAGCAGCCACCTCTGAGGAACACAGC
CCTTCTTGGTCCAGGGGTATTGCAGGCAACAAGGATCTTTCACACGGGGCAGCCAAGTCT
TGCTGCTGTACCACGTCTTCCTGAATATGGAGGAAAAGTTCTTTTGGGGCCGATCCCTCA
GGAATTCTTCCAGTTTCTTTATCCTAAAACCGGTACAACAGGACCCTATATGCTCAGAAC
TGGGCTTGTCTTATATTTTCTCTCCAAAGAAATATATGTGATTACTCCAGAGACCATCTC
TGCCATATCAACAATAGAGTTTCTTGTCTTAAGTAATTAAAAAATATGGTGCCTCTATTG
GAGAATTTGCTGAGAAACATGTTGAAAAAAAAAATGGCCCAACTACAAGAGGTGAAGCAG
GCTTCCATCAAACACATCCAGGCTGCGACTGATCTGGAGAAGTCACAGCAGGCACTGGTT
CAAAAGCTCCATTACCTTTTTGATCTCCAGAGGAATAACATTGCTATGGCCTCAGAGGGT
GCTCACTAGGAACGCTGCCTGGAGTACACAGGAAGTAAAGAATTGCCTAGACTATCATAT
CTCCCTGCAGAATATGATGCGTTGAAGGAACAAGAGCACATGATAAAGTGGGTGGAGAAT
CACGTGGTACAGAGCATCTCCTCACAGCAGGAAAAGGAGACAATAGCCAAGTGCGTTTCG
GATCTAAAGCAGCTC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.12 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
