RetrogeneDB ID:
retro_ecab_496
Organism:
Horse ( Equus_caballus )
Location:
2:74828829-74829289 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
90.26 %
Coverage:
95.03 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
CHMP4B
Parental gene aliases:
No gene alias available
Parental gene description:
charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171]
Genomic region (view in browser)
>retro_ecab_496
AGAAAAAGGTATGAGAAGCAGCTGGCGCAGATCGACGGCACACTATCAATCATCGAGTTC
CAGCGAGAGGCCCTGAAGAATGCCAACACCAACACCGACGTGCTCAAGAACATGGGCTAT
GCCTCCAAGGCCATGAAGGCTGCCCACGACAACATGGACATCGATAAAGTTGATGAGTTA
GTGCAGGAGATTGCTAACCAGCAAGAACTTGCAGAGGAGATTTCAACAGCTATTTCAAAA
CCTGTAGGGTTTGGAGAAGGGTTTGATGAGGACGAACTCATGGCCGAATTAGAAGAACTA
GAACAGGAGGAACCAGACAAGAATTTGCTGGAAGTCAGTGGACCCGAAACAGTCCCTCTA
CCAAACGTTCCTTCCGTTAAGCCTACCATCAAAACCCACCAAGAAGAAGGAAGAGGAAGA
CGACGACATGAAGGAATTGGAGAACTGGGTTGGATCCATT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.4 |
| SRP021940_embryo | 0.14 |
| SRP021940_placental_villous | 0.04 |
| SRP021940_synovial_membrane | 0.05 |
| SRP021940_testis | 0.06 |
Parental protein coverage
Changes in the retrocopy sequence
