RetrogeneDB ID:
retro_ecab_496
Organism:
Horse ( Equus_caballus )
Location:
2:74828829-74829289 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
90.26 %
Coverage:
95.03 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
CHMP4B
Parental gene aliases:
No gene alias available
Parental gene description:
charged multivesicular body protein 4B [Source:HGNC Symbol;Acc:16171]

Genomic region (view in browser)





>retro_ecab_496
AGAAAAAGGTATGAGAAGCAGCTGGCGCAGATCGACGGCACACTATCAATCATCGAGTTC
CAGCGAGAGGCCCTGAAGAATGCCAACACCAACACCGACGTGCTCAAGAACATGGGCTAT
GCCTCCAAGGCCATGAAGGCTGCCCACGACAACATGGACATCGATAAAGTTGATGAGTTA
GTGCAGGAGATTGCTAACCAGCAAGAACTTGCAGAGGAGATTTCAACAGCTATTTCAAAA
CCTGTAGGGTTTGGAGAAGGGTTTGATGAGGACGAACTCATGGCCGAATTAGAAGAACTA
GAACAGGAGGAACCAGACAAGAATTTGCTGGAAGTCAGTGGACCCGAAACAGTCCCTCTA
CCAAACGTTCCTTCCGTTAAGCCTACCATCAAAACCCACCAAGAAGAAGGAAGAGGAAGA
CGACGACATGAAGGAATTGGAGAACTGGGTTGGATCCATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.4
SRP021940_embryo 0.14
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.06

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKRYEKQLAQIDGTLSTIEFQREALENANTNTEVLKNMGYAAKAMKAAHDNMDIDKVDELMQDIADQQELAEEISTAISKPVGFGEEFDEDELMAELEEL
.KRYEKQLAQIDGTLS.IEFQREAL.NANTNT.VLKNMGYA.KAMKAAHDNMDIDKVDEL.Q.IA.QQELAEEISTAISKPVGFGE.FDEDELMAELEEL
Retrocopy
RKRYEKQLAQIDGTLSIIEFQREALKNANTNTDVLKNMGYASKAMKAAHDNMDIDKVDELVQEIANQQELAEEISTAISKPVGFGEGFDEDELMAELEEL


Parental protein
EQEELDKNLLEISGPETVPLPNVPSI-SLPSKPTKKKEEEDDDMKELENWAGTI
EQEE.DKNLLE.SGPETVPLPNVPS..SLPSKPTKKKEEEDDDMKELENW.G.I
Retrocopy
EQEEPDKNLLEVSGPETVPLPNVPSV\SLPSKPTKKKEEEDDDMKELENWVGSI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide