RetrogeneDB ID:
retro_ecab_497
Organism:
Horse ( Equus_caballus )
Location:
2:79174341-79174651 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.52 %
Coverage:
56.92 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_497
AGGGAAAAGGGCAGGTAAATGGTCATAGGTAAGCAAAAGGCTACTCAAATGTCCAAGAAG
GTAACCTGGATGAGAATTCTGTGCCCACTGCCCAGAAGACACCGCCAATCTAAGATGGAC
ACCACCTGCATCACAGCCTGTACCCGCAAGTGATGGGGAGCCTGTCCAAGAGTACACGGA
TTCTCAAGGAACACATCACAAGCTGAACGCAGACAGAGACTGCAAGAAGCTCCTGGCTGA
CCAGGCTGAGACTCCCAGGGCAGAGCCCAAGGAAGCCCACAAGTGCCCTGAGGAGCCGCT
CCAGGCCAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.24

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RRKGRHMGIGKRKGTANARMPEKVTWMRRMRILRRLLRRYRESKKID-RHMYHSLYLKVKGNVFKNKRILMEHI-HKLKADKARKKLLADQAEARRSKTK
R.KGR.M.IGK.K.T....M..KVTW...MRIL..L.RR.R.S.K.D..H..HSLY..V.G...K..RIL.EHI.HKL.AD...KKLLADQAE..R...K
Retrocopy
REKGR*MVIGKQKAT---QMSKKVTW---MRILCPLPRRHRQS-KMD/HHLHHSLYPQVMGSLSKSTRILKEHI/HKLNADRDCKKLLADQAETPRAEPK


Parental protein
EARKRREERLQAK
EA.K..EE.LQAK
Retrocopy
EAHKCPEEPLQAK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide