RetrogeneDB ID:
retro_ecab_498
Organism:
Horse ( Equus_caballus )
Location:
2:79521910-79522357 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.69 %
Coverage:
76.38 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_498
GAGAAGAGAGAGAGAAAGGAGCAGAGTATATTCAAATAAATAATAGCTGAGAACTTCCCA
AACCTGGGGGAGTAACTGCATATACAAGTCCATGAAGCTAATAGAACACCTATTATCTCA
ATGGAAAAAGACCTCCAAGGCACGTTATATTAAAACTGTCAAAAGTAAATGGCAAAGACA
GAATATTAAGGGCAGCCAGAGAGAAGAAAATAACTTACAAAGGAACCCCCATCAGGCTAT
CAGAGGATTTCTCAGCAGAAACTACAGTTTAGGAGAAAGTGGAATGATATATTGAAAATG
TTGAAAGACAATAACTATCAGCCAAGGATACTCTACCCAGCAAAGTTATCCTTCAGATAT
GAAGGAGAAATAAAGGCTTTCCCAGATAAACAAAAGCTGAGGTAATTAATCACCATAGCT
GTCTTACAAGAAATGTTGAGGGCCAGC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EERQNRRESLFKEIITENFLNLGKGLEIQVKEANRTP-NYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWND
E.R.....S.FK.II.ENF.NLG..L.IQV.EANRTP..Y.N..RP.PRH...KL.K...K..I...AAR.KKITYKG.PIRLS.DFS.Q..Q.RR.WND
Retrocopy
EKRERKEQSIFK*IIAENFPNLGE*LHIQVHEANRTP/YYLNGKRP-PRHVILKLSKVNGKDRIL-RAAREKKITYKGTPIRLSEDFS\QKLQFRRKWND


Parental protein
IIKILKYKNYPPRILYPVKLSFRYGREIKAFQDKQKLREFITTRPPLQEMMKTA
I.K.LK..NY.PRILYP.KLSFRY..EIKAF.DKQKLR..IT....LQEM....
Retrocopy
ILKMLKDNNYQPRILYPAKLSFRYEGEIKAFPDKQKLR*LITI-AVLQEMLRAS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide