RetrogeneDB ID:
retro_ecab_5
Organism:
Horse ( Equus_caballus )
Location:
20:20744599-20745172 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
57.75 %
Coverage:
89.05 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
HDGF
Parental gene aliases:
No gene alias available
Parental gene description:
hepatoma-derived growth factor [Source:HGNC Symbol;Acc:4856]

Genomic region (view in browser)





>retro_ecab_5
ATGTTTTTTTTCGGGACCCACGAGACGGCCTTCCTGAGCCCCCAACGCCTCTTCCCGTAC
GAGGAGGCCAAGGAGAAGTTCGGCAGGCCCAACAAGAGGAGGGGGTTCAGCGCGGGGCTG
TGGGAGATCGAGAACAATCCTACCGTCCAGGTCGCCGGCCAGCCCCTGGCCCAAGAGCAG
AGCTGCGCGGAAGGGCCACCGCCGGCGTCCGAGGCCACCGAGGGCGACGGGGACCAGGAG
AGCATCGCCGACGGCGACAGTGATGAGCAGGGGAAGCCCGGCGTCGACCAGACGGTCCAG
GAGGCGGGCGAGAAGGGGCCGCTGAAGAGGAGCGCGGGGGAGCTGCCGGAGGACGCCGCC
AAGCGTCCCAAGGAGGCCGCGCCAGAAGCGGAGGAGGAGGAGGCCGCCGGGGAGGCCGCG
CTGCTGCTGGAGCCGGAGGAGGAGGACGCCAGCGCCACGGCCCAGCCAGGCCTGGCAGGA
GGGTCGCCCCCAGAGCAGCGGGAACCCAAGGAGGAGGCCGCCGAGAAAGACGTCGAGGCC
CCAGGCGTTGGAGAAGGTCGCGAGAGCCTGTAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.1
SRP021940_embryo 0.0
SRP021940_placental_villous 0.13
SRP021940_synovial_membrane 0.0
SRP021940_testis 278.46

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VFFFGTHETAFLGPKDLFPYEESKEKFGKPNKRKGFSEGLWEIENNPTVKASGYQSSQKKSSVEEPEPEPEATEGDGDKKGNAEGSSDEEGKLVIDEPTK
.FFFGTHETAFL.P..LFPYEE.KEKFG.PNKR.GFS.GLWEIENNPTV...G....Q..S..E.P.P..EATEGDGD....A.G.SDE.GK...D....
Retrocopy
MFFFGTHETAFLSPQRLFPYEEAKEKFGRPNKRRGFSAGLWEIENNPTVQVAGQPLAQEQSCAEGPPPASEATEGDGDQESIADGDSDEQGKPGVDQTVQ


Parental protein
EKNEKGALKRRAGDLLEDSPKRPKEAEDPEGEEKEAATLESERPLPVEVEKNSTRSEPGSGRGPPQEEEEEEEEEEAAKEDAEAPGI
E..EKG.LKR.AG.L.ED..KRPKEA..PE.EE.EAA..E....L..E.E..S....PG...G.P...E..E..EEAA..D.EAPG.
Retrocopy
EAGEKGPLKRSAGELPEDAAKRPKEAA-PEAEEEEAAG-EAALLLEPEEEDASATAQPGLAGGSP--PEQREPKEEAAEKDVEAPGV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide