RetrogeneDB ID:
retro_ecab_500
Organism:
Horse ( Equus_caballus )
Location:
2:87319951-87320374 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
66.67 %
Coverage:
99.3 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
RPS23
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S23 [Source:HGNC Symbol;Acc:10410]

Genomic region (view in browser)





>retro_ecab_500
AAGTGTCAAGTTCTTCATACTGCCGGGAACATCCACAGCCACCAAGAGGACCAGAAGCGG
CGTGGTAAACAGTACAAGAAAGCCCACTTGGGCCCAGCCCTGAAGGCCAACGCGTTTGGA
GGCACTTCACGTGCAAAGGGAATTTTGCTGGAAAAAGTCAGGGTTGAAGGTAAATAGCTC
ACTTCTGACAACAGGAAGTGTGTCAAGGGCCAGCTGACGAAGAATAACAAGAAACTCACA
GCTTTCATACCCAATGACGATTGTTTGAACGTTACTGTGGAGAACAATGAAGTTCTGGCT
GCAGGACTTGGTTGTAAAGGTCATTCTGTCAGTGACATTCTTGGAATCCACTTTAGGGTT
GTCAACGTAGCCAATGTCTCTCTCTTGGCCCTAGGTAAAGGCAAGAAGAAAAGACCAAGA
TCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.59

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV
KC..L.TA....SH..DQK...KQYKKAHLG.ALKAN.FGG.S.AKGI.LEKV.VE.K...S..RKCV..QL.KN.KK.TAF.PND.CLN...EN.EVL.
Retrocopy
KCQVLHTAGNIHSHQEDQKRRGKQYKKAHLGPALKANAFGGTSRAKGILLEKVRVEGK*LTSDNRKCVKGQLTKNNKKLTAFIPNDDCLNVTVENNEVLA


Parental protein
AGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS
AG.G.KGH.V.DI.G..F.VV.VANVSLLAL.KGKK.RPRS
Retrocopy
AGLGCKGHSVSDILGIHFRVVNVANVSLLALGKGKKKRPRS


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide