RetrogeneDB ID:
retro_ecab_501
Organism:
Horse ( Equus_caballus )
Location:
2:89814663-89817355 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
95.21 %
Coverage:
100.0 %
Frameshifts:
1
Stop codons:
2
Parental gene:
Parental gene symbol:
LPIN2
Parental gene aliases:
No gene alias available
Parental gene description:
lipin 2 [Source:HGNC Symbol;Acc:14450]
Genomic region (view in browser)
>retro_ecab_501
ATGAATTATGTGGGACAGCTGGCTGGGCAGGTGATTGTCACTGTGAAAGAACTCTACAAA
GGCGTTAACCAAGCCACTCTGTCCGGGTGCATCGATGTCATTGTGGTACGGCAGCAGGAT
GGCACCTATCAGTGTTCGCCATTTCAGGTTCGGTTCGGGAAGCTGGGAGTCCTGAGATCC
AAGGAGAAAGTGATTGATATAGAAATCAATGGCGATGCAGTGGATCTTCACATGAAATTG
GGTGACAATGGAGAAGCTTTCTTTGTGGAGGAGACTGAAGAGGAATATGAAAAGCTTCCT
GCTTACCTTGCCACCTCACCAATTCCTACTGAAGATCACTTCTTCAAAGATATTGACACC
CGTTTTGTGAAATCTGGTGGAAATGAAAGACCATCTCAGAGTTCAGACATCTCACACATC
TTGGACACGGAGAGAGATTTTGCTCCAAGTTCTGTGAAAAAGAAAAAACAAAGGACAAAG
AAATGCAAACAGGACAGTAAGAAGGAAGACCAGGCCACTTGCCCTGCTGCAGAGGACACC
GTGGATGTGAACCTGAGTTCTGACGATGGCAAGGGGGCCCAGTCAGCAAGAGGATCTTCA
AATGCTTCCTTAAAGGAAGAAGAATATAAAGAGCCTTTGCTTTTCCATTCTGGGGATCAA
TACTCCTTATCTGATGGAGACTGGTCGCCTTCAGACAACACCTATTCCCCAAGGGCAGTG
TGTCCTAAGAGCGATTCAGAGCTGGAGGTGAAACCAGCCGAGAGCCTGCTCAGATCTGAG
TCCCACATGGAGTGGACGTGGGGCGGGTTCCCACAGTCCACCAAGGTCAGCAAAAGAGAC
AGATCTGACCATCATCCTAGGACAGGTACGATTACACCATCAGAAAATACCCATTTTCGG
GTAATTTCAAGTGAGGACAGGCTCAGCAGTGAGGTTGAAAAGGATGCTTCCATGGGAGAA
ACGGTCTGTACCATAGTGAAACCCAAACCCAGAGCCCTGTGTAAGCAGATGAGCGATGCA
ACTAGAGCTGCAGGACTTGTCGAACCTCTCCTTGAGCCACCTCCGATTTCATCTATGTTA
GATGCAGACCACCTTCCCAACCCCTCGTTGCTGGAGGCTCCCTCAGAATCAAAACCAGCA
GCTAAGGTAGACTCGCCGTCAAAGAAGAAAGGTGTCCACAAGAGAAGCCAACACCAGGGA
CCTGATGATATTTACCTAGATGATTTAAAGGCTCTAGAACCTGAAGTCGCAGCTCTCTGT
TTCCCTAAAAGTGGATCAGACCCCGTCTCCAGGCAGTGACCCGAGTCTGACACGCCTTCT
GGCTCCCAGTCCCCGCAGTCCGTGGGAAGCGCGGCCACTGATAGTGGCACTGAGTGCCTC
TTGGATTCTACCATGGACTTGCCCGACGTCACCCTCTCCCTTTGTGGGGGCCTCAGTGAG
AATGGAGAAATTTCTAAAGAAAAATTCGTGGAGCATATCATTACTTATCATGAATTTGCA
GAAAACCCTGGACTTATAGACAATCCTAACCTTGTAATACGGATATATAACCGTTACTAT
AACTGGGCTTTGGCTGCTCCCATGATCCTTAGCTTACAAGTGTTCCAGAAGAGCTTGCCT
AAGGCCTCAGTCGAGTCCTGGGTCAAAGATAAGATGCCAAAGAAATCTGGTCGCTGGTGG
TTTTGGCGTAAGAGAGAAAGCATGACCAAACAGCTGCCGGAGGCCAAGGAAGGGAAATCC
GAGGTGCTTGCCGACGAGTGACCTGCCGTCAGGTGCAAAGGAGCTGGCCAGTGGCAGGTC
AGCCGAGGATGACTCGTCGAGTGACGAGGGATCACAGGAGCTCGAAGAATCAATCAAAGT
GGACCCCGTCCCCACAGAGCCCCCGAGCCACGGCAGCACGACCTCATATAAGAAGTCTCT
TCAACTCTCCTCAGACCAGATTGCAAAACTGAAGCTCCAAGATGGCCCAAATGATGTTGT
GTTTAGTATTACAACCCAGTATCAAGGTACCTGCCGTTGCGCAGGGACCATTTACCTGTG
GAACTGGAATGACAAGGTCATCATTTCAGATATCGATGGAACGATAATCAAGTCTGATGC
TTTGGGACAGATTCTTCCACAGCTGGGTAAAGACTGGACTCATCAGGGTATAGCAAAGCT
CTACCATTCCATCAACAAGAATGGCCACAAGTTTCTGTACTGTTCAGCTTGTGCCATCAG
CACGGCTGACGTGACCTGTGGCTACCTGCACTGAGTCAATGACAAGGGCACAATCTTGCC
CCGGGGCCCTCTGATGCTGTCCCCCAGCAGCTTGTTCTCGGCCTTCCACAGGGAAGTGAT
AGAAAAGAAACCAGAGAAGTTCAAAATTGAGTGTCTGAATGACATCAAGAATCTGTTTGC
CCCGTCTAAGCAGCCCTTCTATGCTGCCTTTGGAAACCGTCCCAGTGATGTCTATGCTTA
CACACAAGTTGGAGTTCCAGACTGCAGAATATTCACTGTGAACCCCAAGGGTGAATTAAT
ACAAGAAAGGACCAAAGGAAACAAGTCATTGTATCACAGACTGAGCGAGCTCGTGGAGCA
TGTATTCCCACTCCTCAGTAAGGAACAGAATTCCGCATGTCCGTGCCCAGAGTTCAGCTC
CTTCTGCTACTGGCGAGACCCGATCCCCAAAGTGGACCTGGATGACCTGGCC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.06 |
| SRP021940_cerebellum | 0.45 |
| SRP021940_embryo | 0.17 |
| SRP021940_placental_villous | 0.09 |
| SRP021940_synovial_membrane | 0.1 |
| SRP021940_testis | 0.24 |
Parental protein coverage
Changes in the retrocopy sequence
