RetrogeneDB ID:
retro_ecab_502
Organism:
Horse ( Equus_caballus )
Location:
2:96242437-96243544 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
73.78 %
Coverage:
56.06 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
PABPC4
Parental gene aliases:
No gene alias available
Parental gene description:
poly(A) binding protein, cytoplasmic 4 (inducible form) [Source:HGNC Symbol;Acc:8557]
Genomic region (view in browser)
>retro_ecab_502
ATGAATGTAGCAGCCAAGTACCGCCAGGCCTCCCTGTATGTGGGGGACCTCCATGCAGAT
GTCACCGAGGACCTGCTGTTCAAGAAATTCAGCACTGTGGGGCCCGTGCTGTCCATCCGC
ATCTGCAGGGACCTGGTCACCCGCCGCTCTCTGGGCTATGCCTATGTGAACTTCCTGCAG
CTGGCTGATGCCCAGAAGGCCCTGGACACAATGAACTTTGACACGATCAAAGGCAAATCC
ATCCGCCTCATGTGGTCTCAACGTGACGCCTACTTAAGGAAATCTGGGATTGGGAACGTG
TTCATCAAGAATCTGGACAAATCCATTGATAACAAAACCCTTTATGAACATTTTTCGGCC
TTTGGGAAGATCCTGTCCTCCAAGGTGATGAGCGATGACCAAGGCTCCAGGGGCTATGCG
TTTGTGCACTTTCAGAACCAGATGGCCGCAGATAGGGCCATCGAGGAGATGAACGGGGCG
CTGCTTAAGGACTGCAGGCTGTTTGTTGGCAGATTCAAAAACCGCCAAGATCGGGAAGCC
GAGCTCCAAAACAAAGCCAATGAATTCACCAATATTTACATCAAAAACTTTGGAGATGAC
ATGGATGATAAGAGACTGGAGGAAGTTTTCAGTAAATATGGCAAAACTGTGAGTGTTAAG
GTGATGACAGACTCCACTGGGAAATCCAAAGGCTTTGGCTTTGTGAGTTTTTATAGCCAC
GAGGCTGCCCAAAAGGCCGTGGAAGAAATGAATGGAAAGGATATAAACGGACAGCTGCTC
TTTGTAGGCCGGGCACAAAAGAAAGCAGAGCGACAGGCTGAATTAAAGCAAATGTTTGAG
CAGCAGAAACAGGAAAGATTTCGGCGGTGCCAGGGGGTGAAGCTCTACATTAAGAACCTC
GATGACACCATTGATGATGAAAAACTACGGAGGGAGTTTTCTTCCTTTGGATCAATTAGC
AGAGTCAAGGTGATGAAGGAAGAAGGGCGAAGCAAAGGCTTTGGCTTGATCTGCTTCTCC
TCTCCTGAAGAGGCCACCAGAGCAATGACTGAGATGAATGGCCGCATCTTGGGCTCCAAG
CCACTCAACATCGCCCTGGCGCAGAGG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.52 |
| SRP021940_cerebellum | 0.35 |
| SRP021940_embryo | 7.14 |
| SRP021940_placental_villous | 1.7 |
| SRP021940_synovial_membrane | 1.22 |
| SRP021940_testis | 0.53 |
Parental protein coverage
Changes in the retrocopy sequence
