RetrogeneDB ID:
retro_ecab_503
Organism:
Horse ( Equus_caballus )
Location:
2:98174794-98175215 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
59.03 %
Coverage:
98.61 %
Frameshifts:
2
Stop codons:
3


Parental gene:
Parental gene symbol:
SRP19
Parental gene aliases:
No gene alias available
Parental gene description:
signal recognition particle 19kDa [Source:HGNC Symbol;Acc:11300]

Genomic region (view in browser)





>retro_ecab_503
ATGATTTGCACAGCTGTGTGATCCCCAGCTGAGCAGAGCAGCTTCATTTATGTCTATCCT
CCATATTTAAATAATAATAAGACCATAACAGAAGGAGATGGATCCCATAGATAAGGCTGT
TGAAAAGTCCTACAGCTACAGAGATCCAAGATAAATGCTCTGTGGTTGGACTTAATGCAT
TTCTTGAGAAAAATAAAATATACTCTAGAGAATGCAATTGTGACTTTCAATACAGGGGCA
TAGTTAGGGTCCAGATCAATCAGGATGATGGCATACAGTGTCTCATAAATTTCCTGCTAT
GTAAATCAGTAATGTATAGAGCAGAGAGATACATCAACTAAAATAGAATTACACAAAAAA
TAGAAGATGGGACCAAAGTCTATGGCAAGGAGAGGGAAATCACAAAAGGAAGGGGAAAAG
A

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MACAAARSPAEQDRFFCIYPAYLNNKKTIAEG-RRIPISKAVENPTATEIQDVCSAVGLNVFLERNKMYSREWNRDAQYRGRVRVQLKQEDGSLCLVQFP
M.C.A..SPAEQ..F...YP.YLNN.KTI.EG.R.IP.......PTATEIQD.CS.VGLN.FLE.NK.YSRE.N.D.QYRG.VRVQ..Q.DG..CL..F.
Retrocopy
MICTAV*SPAEQSSFIYVYPPYLNNNKTITEG/RWIP*IRLLKSPTATEIQDKCSVVGLNAFLEKNKIYSRECNCDFQYRGIVRVQINQDDGIQCLINFL


Parental protein
SRKSVMLYVAEMIPKLKTRTQKTGGG-DQSLQQGEGSKKGKGKK
..KSVM.Y.AE........TQK...G.DQSL.QGEG..K.KGK.
Retrocopy
LCKSVM-YRAERYIN*NRITQKIEDG/DQSLWQGEGNHKRKGKR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide