RetrogeneDB ID:
retro_ecab_505
Organism:
Horse ( Equus_caballus )
Location:
2:107102344-107102760 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary
Identity:
54.23 %
Coverage:
55.29 %
Frameshifts:
1
Stop codons:
3
Parental gene:
Parental gene symbol:
SET
Parental gene aliases:
No gene alias available
Parental gene description:
SET nuclear oncogene [Source:HGNC Symbol;Acc:10760]
Genomic region (view in browser)
>retro_ecab_505
AAAAAAGCCAGTGAGGAAATTTTCAGAGTAGAACAAAAATGGCACAAACTCTTCAGTCTT
TTCAAAAGAGGTCATAACTTGGTCTCCCAATTCCCAAATTTAGAGGTGATGTTTGTTGAC
CATCTGCAAATGACTGCCCTCCTTGGGGATGCGCAAGAAGAGATGCTGAATTATTTTGTC
GGAACTGAAGTGACAGAATTTGAAGATTTTAAATCCTATTACAGAATAGGTTTTTAGTTT
GAGGAAAATTCTTACTTTAAAATAAAGTTCTTTCCAATACGTTTTATCTCAGTAAGAGTG
GCGACTCATCTTCCAAGTTGACTGAAATCAGATGGGAATCTGGGAAGGACTTGATAAAAT
GTTCTGATCAGACATAAAATAAACGTGTCTTGAAGAAGTAGCATGAAAACTCTGAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.52 |
| SRP021940_cerebellum | 0.05 |
| SRP021940_embryo | 0.12 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.26 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
