RetrogeneDB ID:
retro_ecab_507
Organism:
Horse ( Equus_caballus )
Location:
2:113233720-113234205 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
54.44 %
Coverage:
98.8 %
Frameshifts:
4
Stop codons:
1
Parental gene:
Parental gene symbol:
PPIF
Parental gene aliases:
No gene alias available
Parental gene description:
peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259]
Genomic region (view in browser)
>retro_ecab_507
AGCCAAGGTCAACCCACCCGATTCTTTGGCATCGCAGTCAAGGGCTAGCTCTTGAGCCAT
GTCTGCTTCAAGCTGTTTGCAGACAGATTTCCAAAGACAGCAGAAACATTTTGCATTGTG
AGCACTGGGGAGAAAGAGTTTGGTTATAAGGGCTCCTGCTTTCACAGCATTATTCTGGGA
CTTATGTGCCAGGGTGGTGACTTCACACCCTATAATAGCACTAGTGGCAAGTCCATCAAT
GGGGAGAAATTTGATGATGAGGACTTCAAGCATACAGGTCCTGGCACCTTGTCTATGGCA
AATACTGGACTCAACAAAACGGTTCCCAGTTTTTCACCTGTACTGCCAAGACTGAGTGGT
TGATGGCAAGCACGTGGTCTTGGCAACGTGAAAGAGGATGTGAATATTGTGAGAGCCATG
GAGAACTCTGGGTCCAGAATGTCAAGACCAGCAAGAAGCTCACCATTGTCCACTGTAAAC
AACTC
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.02 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
