RetrogeneDB ID:
retro_ecab_507
Organism:
Horse ( Equus_caballus )
Location:
2:113233720-113234205 (+)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.44 %
Coverage:
98.8 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
PPIF
Parental gene aliases:
No gene alias available
Parental gene description:
peptidylprolyl isomerase F [Source:HGNC Symbol;Acc:9259]

Genomic region (view in browser)





>retro_ecab_507
AGCCAAGGTCAACCCACCCGATTCTTTGGCATCGCAGTCAAGGGCTAGCTCTTGAGCCAT
GTCTGCTTCAAGCTGTTTGCAGACAGATTTCCAAAGACAGCAGAAACATTTTGCATTGTG
AGCACTGGGGAGAAAGAGTTTGGTTATAAGGGCTCCTGCTTTCACAGCATTATTCTGGGA
CTTATGTGCCAGGGTGGTGACTTCACACCCTATAATAGCACTAGTGGCAAGTCCATCAAT
GGGGAGAAATTTGATGATGAGGACTTCAAGCATACAGGTCCTGGCACCTTGTCTATGGCA
AATACTGGACTCAACAAAACGGTTCCCAGTTTTTCACCTGTACTGCCAAGACTGAGTGGT
TGATGGCAAGCACGTGGTCTTGGCAACGTGAAAGAGGATGTGAATATTGTGAGAGCCATG
GAGAACTCTGGGTCCAGAATGTCAAGACCAGCAAGAAGCTCACCATTGTCCACTGTAAAC
AACTC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.02
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
SSRNPLVYLDVGADGQTLGRVVLELNADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLS
S...P.........G..L..V...L.AD..PKTAE.F....TGEK.FGYKGS.FH..I...MCQ.GDFT..N.T.GKSI.G..F.DE.F..KH.GPG.LS
Retrocopy
SQGQPTRFFGIAVKG*LLSHVCFKLFADRFPKTAETFCIVSTGEKEFGYKGSCFHSIILGLMCQGGDFTPYNSTSGKSINGEKFDDEDF--KHTGPGTLS


Parental protein
MANAGPN-TNGSQFFICTIKTDWL-DGKHVV-FGHVKEGMDVVKKIESFGSKSG-KTSKKIVITDCGQL
MAN.G.N..NGSQFF.CT.KT.WL.DGKHVV..G.VKE....V...E..GS....KTSKK..I..C.QL
Retrocopy
MANTGLN/QNGSQFFTCTAKTEWL/DGKHVV/LGNVKEDVNIVRAMENSGSRMS/KTSKKLTIVHCKQL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide