RetrogeneDB ID:
retro_ecab_509
Organism:
Horse ( Equus_caballus )
Location:
2:172359-172797 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
56.95 %
Coverage:
50.51 %
Frameshifts:
3
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS2
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S2 [Source:HGNC Symbol;Acc:10404]

Genomic region (view in browser)





>retro_ecab_509
AAGGGACATGGTCTGGGCAGGGCTTGACATCAAAGAGCTCTCTGAGGCAAAGCCAAGGAC
AAGAGGTGGCTCCTCATAACTAAGCTGGGCCTCATGGTCAGGACATGAAGATAAAGTCCT
TGCAGGAGGTCTATCTCTTCTCCCCATCAAAGAGTCTGAGGTCACCAACCTTGTTCTGGA
GACAGCCCTCAAAGACAAGGTTTGGAAGATTAGGCCCCTACAAAAGCAAACCTGCACTGG
CCAGCAGACCAAGTTCAAGCATTTGTCACCATCAGGGACTACAGTGGCCACGTTGGTCTG
GGTGGTAAGTGCTCCAGGGAGGTAGCCGTTGCCACGCACTGGGCCACCGTCCTGGTCCAC
AACTCCATAGACGCAGGGTGGCGAGGCCACAAGTGGATCAAGTTTGGCAAGCCCCACACC
ATCCCTTGCAAGGTGACA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.05
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLVK-DMKIKSLEEIYLFSLPIK-ESEIIDFFLGASLKDEVLKIMPVQKQTRAGQRTRFK-AFVAIGDYN
.G.G.GR.....A..GKA.DK.W...TKLG..V..DMKIKSL.E.YLFS.P.K.ESE.....L...LKD.V.KI.P.QKQT..GQ.T.FK.AFV.I.DY.
Retrocopy
KGHGLGRA*HQRAL*GKAKDKRWLLITKLGLMVR/DMKIKSLQEVYLFS-PSK/ESEVTNLVLETALKDKVWKIRPLQKQTCTGQQTKFK/AFVTIRDYS


Parental protein
GHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVT
GHVGLG.KCS.EVA.A...A..L...SI....RG....K.GKPHT.PCKVT
Retrocopy
GHVGLGGKCSREVAVATHWATVLVHNSIDAGWRGHKWIKFGKPHTIPCKVT


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide