RetrogeneDB ID:
retro_ecab_51
Organism:
Horse ( Equus_caballus )
Location:
8:34691631-34691949 (+)
Status:
KNOWN_PROTEIN_CODING
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
61.7 %
Coverage:
96.91 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
TXN
Parental gene aliases:
No gene alias available
Parental gene description:
Thioredoxin [Source:UniProtKB/Swiss-Prot;Acc:O97508]

Genomic region (view in browser)





>retro_ecab_51
ATGGTGAAAGTGATCCTGAGCAAGGAGGACTTCAAGCTGGCGCTCCAGGAGGCTGGGGAG
AGGCTGGTGGCCGTGGACTTCTCTGCCATGTGGTGTGGACCTTGCAGGACCATCAAGCCT
CTTTTCCGTTCCCTGTCTGTGAAACACGACGATGTGGTGTTCCTGGAAGTGGATGCAGAT
GACTGCGAGGAGCTGGTGAAAGACCTCGAGATCTCTTGCATCCCAACCTTTCAGTTTTAC
AAAAAAGAAGAAAAGGTGGGGGAATTTTGTGGCGCCCTTAAGGAAAAACTCGAAACAGTC
ATTGCAGAATTAAAATAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 12.05

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FQEALNSAGEKLVVVDFSATWCGPCKMIKPFFHSLSEKYSNVVFLEVDVDDCQDVAAECEVKCMPTFQFFKKGQKVDEFSGANKEKLEATIKGL
F..AL..AGE.LV.VDFSA.WCGPC..IKP.F.SLS.K...VVFLEVD.DDC.......E..C.PTFQF.KK..KV.EF.GA.KEKLE..I..L
Retrocopy
FKLALQEAGERLVAVDFSAMWCGPCRTIKPLFRSLSVKHDDVVFLEVDADDCEELVKDLEISCIPTFQFYKKEEKVGEFCGALKEKLETVIAEL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide