RetrogeneDB ID:
retro_ecab_513
Organism:
Horse ( Equus_caballus )
Location:
2:33212716-33213082 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
86.07 %
Coverage:
65.24 %
Frameshifts:
0
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_513
TTCCAAAGAATGACCACAACCTCTTCATTAGAAGGTAAACAGAATTTGGTGATTATGGGT
AGGAAGACCCCGTTCTCCATTCCTGAAAAGATTCGACCTTTAAAGGACAGAAATAATTTA
GTTCTCAGTAGAGAACTCAAGTAACGTCCACAAGGAGCTCATTTTCTTCCCAAAAGTTTG
GATGATGCCCTAACACTTACTGCACAACCAGAATTAACAAATAAAATGGACATGGTTTGG
ATAGTGGGAGGCAGTTCTGTTTATAAGGAAGCAAGGAACAAGCCAGGCCATCTTAGACTA
TTTGTGACAAGTATCATGCAGGAATTTGAAAGTGACACATTTTTTCCAGAAACTGATTTG
GAGAAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FQRMTTASSVEGKQNLVIMGRKTWFSIPEKNRPLKDRINLVLSRELKEPPQGAHFLAKSLDDALSLLEQPELANKVDMVWIVGGSSVYKEAMNKPGHLRL
FQRMTT.SS.EGKQNLVIMGRKT.FSIPEK.RPLKDR.NLVLSRELK..PQGAHFL.KSLDDAL.L..QPEL.NK.DMVWIVGGSSVYKEA.NKPGHLRL
Retrocopy
FQRMTTTSSLEGKQNLVIMGRKTPFSIPEKIRPLKDRNNLVLSRELK*RPQGAHFLPKSLDDALTLTAQPELTNKMDMVWIVGGSSVYKEARNKPGHLRL


Parental protein
FVTRIMQEFESDTFFPEIDFEK
FVT.IMQEFESDTFFPE.D.EK
Retrocopy
FVTSIMQEFESDTFFPETDLEK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide