RetrogeneDB ID:
retro_ecab_515
Organism:
Horse ( Equus_caballus )
Location:
2:52888305-52888737 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
67.11 %
Coverage:
100.0 %
Frameshifts:
4
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_515
ATAAAATTCAATCCTTTCATAACCTAGGACCACAAAAACTGCAAACACCACTTCAATACC
TCCTTGCACAGGCGCAGGAAGATACATCTGCCCAGCTCTCCAAGAAGCTGCAGCAGAAGT
ACAATGTCTGCTCCATGTCCATTTGCACAGACAACGAGGTCCAGATGTTTCAGGGACACC
ACAAAGGTCAAGCAAATTGGCAAAGTGGTGTGGGTATGCAGAAAGAAATACATTATCTAC
ACGAAGTGGGTGCAATGTAAGAAGACTAACAGCAAAACTATCCATGTAGACATTCACCCA
AGCAAGGTGGTTATCACCAGGCTAAAATTGGACAAAGATTGGAAAAAATTCTTGAACACA
AAGCCAAATCTTGACAAGTTGGGAAAAAAGAAAGGCAAATGCAAAGAAGAACTTATTGAG
AAAATGCAGGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
MKFNPFVTSDRSKNRKRHFNAPSHIRRKI-MSSPLSKELRQKYNVRSMPIRKDDEVQVVRGHYKGQ-QIGKVVQVYRKKYVIYIERVQREKANGTTVHVG
.KFNPF.T.D..KN.K.HFN...H.RRKI..S..LSK.L.QKYNV.SM.I..D.EVQ...GH.KGQ.QIGKVV.V.RKKY.IY...VQ..K.N..T.HV.
Retrocopy
IKFNPFIT*DH-KNCKHHFNTSLHRRRKI/TSAQLSKKLQQKYNVCSMSICTDNEVQMFQGHHKGQ\QIGKVVWVCRKKYIIYTKWVQCKKTNSKTIHVD


Parental protein
IHPSKVVITRLKLDKDRK-KILERKAKSRQV-GKEKGKYKEETIEKMQE
IHPSKVVITRLKLDKD.K.KILE.KAKS.QV.GK.KGK.KEE.IEKMQ.
Retrocopy
IHPSKVVITRLKLDKDWK/KILEHKAKS*QV\GKKKGKCKEELIEKMQD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide