RetrogeneDB ID:
retro_ecab_517
Organism:
Horse ( Equus_caballus )
Location:
2:63968214-63968623 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
72.54 %
Coverage:
63.89 %
Frameshifts:
4
Stop codons:
0


Parental gene:
Parental gene symbol:
RPL10A
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein L10a [Source:HGNC Symbol;Acc:10299]

Genomic region (view in browser)





>retro_ecab_517
GTGACTGTCCCCCACAAGGACATTGAAGCACTGAAGAAATTCAACAAAAATAAGCTGGTC
CAGAAGCTAGCCAAGAAGTATGATACTCTTTTGGTTTATAGTCTCTGATCAAGCACATCC
TACAAATCCTTAGCCTAGGCCTGGATAAGGCAAGCAAGTTCCCTTCCTTGATGAACCACG
GTGAGAATATGGTGGCCAAAGTCAATGAAGTGAAGTCTAGAATCAAGTTCAATATGAAGA
AGGTGTGGGTCTGGCAGTGGCCATTGGTGATGTGAAGATGACGGATGATGAACTTGTGTA
CAACATCCACTTAACTGTCAACTTCCTAGTGTCGTTGCTCAAGAAGAGTTGGCAGAATGT
GTGGGTTTATACATCAAGAGCACCAATTGGCAAGCCCCAGCATCCATAC

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
VDIPHMDIEALKKLNKNKKLVKKLAKKYDAFLASE-SLIKQIPRILGPGLNKAGKFPSLLTHNENMVAKVDEVKSTIKFQMKKV-LCLAVAVGHVKMTDD
V..PH.DIEALKK.NKNK.LV.KLAKKYD..L....SLIK.I..IL..GL.KA.KFPSL..H.ENMVAKV.EVKS.IKF.MKKV...LAVA.G.VKMTDD
Retrocopy
VTVPHKDIEALKKFNKNK-LVQKLAKKYDTLLVYS/SLIKHILQILSLGLDKASKFPSLMNHGENMVAKVNEVKSRIKFNMKKV/VGLAVAIGDVKMTDD


Parental protein
ELVYNIHLAVNFLVSLLKKNWQNV-RALYIKST-MGKPQRLY
ELVYNIHL.VNFLVSLLKK.WQNV...LYIKST..GKPQ..Y
Retrocopy
ELVYNIHLTVNFLVSLLKKSWQNV/VGLYIKST\IGKPQHPY


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide