RetrogeneDB ID:
retro_ecab_518
Organism:
Horse ( Equus_caballus )
Location:
2:66105908-66106415 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
54.97 %
Coverage:
98.82 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_518
AAGAAACAAAATAATAGGTGCCAAATGAAAGAACAAGACAAAATCTCAGAAGAAACATCT
TAATGAAACAGAGAGAAGTGATTTACCTGATTAAGAGTTCAAAATAACAATCAGAGAGAT
GCTCACTAAGCTCAGGAGAACAATGGATGAAAAAAGTGAGACCTTCAACAAAGAGACAGA
AAATATAAGAAAGTACCAAATAGAACTCACAGAGCTGAAGAATATAATAATGAAGCCGAA
GAACACAATAGAGGGGTTCAACAGCAGACTAGGTGAAGCAGAAGAAAAGATCAGTGAACT
CAAAGAGAGGGCAGTAGAACTCACTCAGAGCAACAAAAAGAAAAAAGAACAAAAAAAAGC
AAAGATAGCTTAAATGACTTATGAGACAACAGCAAGCAGACCAACAACTGCATTATAGGG
GTCCCAAAAATAGATGAGAGAAAGAGAGGAGCAAAAGACATCTTTAAAGAAATAATGCCT
GAAAACTTCCCTAATCTAGGGAAGGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.05
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.03
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KKQGNMFQM-KEQDKPEN-NLNEMEVSNLPNKEFQVKVIKMLTKLKRRMDEHSGNFNKETDSIRKCQIEVTELKNTIPELTNTLEGFNSRLDEAEERISE
KKQ.N..QM.K...K.....LNE.E.S.LP..EF......MLTKL.R.MDE.S..FNKET..IRK.QIE.TELKN.I....NT.EGFNSRL.EAEE.ISE
Retrocopy
KKQNNRCQM\KNKTKSQKKHLNETERSDLPD*EFKITIREMLTKLRRTMDEKSETFNKETENIRKYQIELTELKNIIMKPKNTIEGFNSRLGEAEEKISE


Parental protein
LNDRA-ELTQSEQQKEKRMKNTDNSLRELWDNIKHANIRIIGVPEGEERDKGAENLFVEIIQENFPNLRKE
L..RA...T.SEQ...........SL..L.DN.K..N..IIGVP...ER..GA...F.EI..ENFPNL.KE
Retrocopy
LKERA/SRTHSEQXXXXXXXXXKDSLNDL*DNSKQTNNCIIGVPKIDERKRGAKDIFKEIMPENFPNLGKE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide