RetrogeneDB ID:
retro_ecab_519
Organism:
Horse ( Equus_caballus )
Location:
2:67306221-67306455 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
87.18 %
Coverage:
57.78 %
Frameshifts:
0
Stop codons:
0


Parental gene:
Parental gene symbol:
FABP3
Parental gene aliases:
No gene alias available
Parental gene description:
fatty acid-binding protein, heart [Source:RefSeq peptide;Acc:NP_001157357]

Genomic region (view in browser)





>retro_ecab_519
ACATATGGCACCTTCAAGAACACGGAGATCAGCTTCAAGCTGGGGGTGGAGTTTGATGAG
ACGATGGCGGATGACAGGAAGGTCAAGTCCCTTGTGATGCTGGATGGAGGCAAACTTGTC
CACGTGCAGAAGTGGAATGGGCAAGAGACAACACTGCTGTGGGAGCTAATTGATGAAAAA
CTCATCCTGACACTCACCCATGGCAGCGCAATGAGCACTCGCATTTACAGAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
THSTFKNTEISFKLGVEFDETTADDRKVKSLVTLDGGKLVHVQKWNGQETTLVRELIDGKLILTLTHGSAVSTRTYEK
T..TFKNTEISFKLGVEFDET.ADDRKVKSLV.LDGGKLVHVQKWNGQETTL..ELID.KLILTLTHGSA.STR.Y.K
Retrocopy
TYGTFKNTEISFKLGVEFDETMADDRKVKSLVMLDGGKLVHVQKWNGQETTLLWELIDEKLILTLTHGSAMSTRIYRK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide