RetrogeneDB ID:
retro_ecab_52
Organism:
Horse ( Equus_caballus )
Location:
28:15584077-15585814 (-)
Status:
KNOWN_PROTEIN_CODING
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
60.39 %
Coverage:
99.34 %
Frameshifts:
0
Stop codons:
0
Parental gene:
Parental gene symbol:
GALNT12
Parental gene aliases:
No gene alias available
Parental gene description:
UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 12 (GalNAc-T12) [Source:HGNC Symbol;Acc:19877]
Genomic region (view in browser)
>retro_ecab_52
ATGGCCGTGAGGTGGACCTGGGCTGGCAAAAGCTGCCTGCTGCTGGCGCTTTTAACGGTG
GCCTATATCCTGGTGGAAGTCTCGGTCTCCACTTTCCATGCCTCCCCGGGAACCGGCCTG
GCCAGGGATTGGGGATCAAGACAGATCTCCGACCCTGGGGACAAGGCAGAGGATTTGTCT
CGACCGCTTTATGAGAAGCCCCCTGCGGATTCCCATGCACTTGGGGAGTGGGGGAAAGCC
AGCAAACTCCAGCTCAACGAGGGGGAACTGAAGCAGCAAGAAGAACTCATTGAGAGATAT
GCCATTAATATTTACCTCAGTGACAGGATCTCCCTCCACCGCCACATAGAGGATAAAAGA
ATGTATGAGTGTAAATCCCAGAAGTTCAACTATAGGAAACTTCCCACCACGTCTGTTGTT
ATTGCTTTTTATAATGAAGCCTGGTCGACTCTGCTCCGCACCATCCACAGTGTTCTAGAA
ACTTCTCCTGCAGTCCTTTTGAAGGAGATCATCTTAGTCGATGACTTGAGTGACAGAGTT
TATTTGAAGACACAACTTGAAACTTATATCAGCAATCTTGATAGAGTCCGCTTGATTAGA
ACAAATAAGCGAGAGGGGCTGGTCAGGGCCCGTCTGATTGGGGCCACTTTTGCCACTGGG
GATGTCCTCACTTTCTTGGATTGTCACTGTGAGTGTAATTCTGGTTGGTTGGAACCACTT
TTGGAAAGGATCAGTAAAGATGAAACGGCAGTTGTGTGTCCTGTCATAGACACCATTGAT
TGGAATACTTTTGAATTCTATATGCAGACTGGGGAGCCCATGATTGGTGGTTTTGACTGG
CGTTTAACGTTCCAGTGGCATTCTGTCCCCAAACATGAAAGGGACAGGCGGAAATCGAGA
ATTGACCCAATCAGTTCACCCACCATGGCTGGAGGACTGTTTGCTGTCAGCAAGAAGTAT
TTTGAGTACCTTGGAACATATGACACTGGAATGGAAGTGTGGGGAGGTGAAAACCTCGAG
CTGTCTTTTAGGGTGTGGCAGTGTGGAGGTAAATTGGAGATCCACCCCTGTTCCCACGTG
GGCCATGTATTCCCGAAACGGGCACCGTATGCTCGGCCCAATTTCCTCCAGAATACTGCC
CGGGCAGCAGAAGTGTGGATGGACGAGTACAAAGAGCATTTCTACAATCGGAACCCTCCA
GCACGGAAAGAAGCTTATGGTGATATTTCTGAAAGAAAATTACTACGAAAACGACTGAAG
TGCAAGAGCTTTGACTGGTATTTGAAAAATGTGTTTTCTAATTTGCACGTTCCGGAGGAT
AGGCCAGGCTGGCACGGAGCTATTCGCAGTATGGGGATCCCTTCTGAATGTTTAGATTAT
AATGCTCCTGACAACAACCCTACAGGTGCTAACCTTTCACTGTTTGGATGCCATGGTCAA
GGCGGCAATCAATTCTTTGAATATACTTCAAAGAAAGAAATAAGGTTTAATTCTGTGACG
GAGTTATGTGCAGAGGTTCCTGAGCAAAAAAACCATGTAGGAATGCAAAATTGTCCAAAA
GATGGGTTCTCTATTCCAGCAAACATTATTTGGCATTTTAAAGAAGATGGAACCATTTTT
CATCCACACTCAGGACAGTGCCTTAGCGCTTATTGGACACCTGAGGGCCGACCGAATGTT
GAAATGAGAACTTGTCGTGCTCTAGCTAAAAATCAAATCTGGAAGTTTGAGAAATAG
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 2.03 |
| SRP021940_cerebellum | 0.55 |
| SRP021940_embryo | 2.68 |
| SRP021940_placental_villous | 9.93 |
| SRP021940_synovial_membrane | 6.56 |
| SRP021940_testis | 3.56 |
Parental protein coverage
Changes in the retrocopy sequence
