RetrogeneDB ID:
retro_ecab_521
Organism:
Horse ( Equus_caballus )
Location:
2:73224658-73225403 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
64.29 %
Coverage:
84.19 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_521
AGACAAAAGAATATGTTTCAAGTAAGGGAACAGGACAAAACCTCAGAAAAAGACCTAAAT
GAAACAGAAATAAAGAATCTATCTGAAAAAGAGTGCAAACAAAAAGTCATAAATATGTTC
ACTGATCTTGGGAGAAGAATGGATGAACTCAGCGAGAACTTCAACAATGAGTTGGAAAAT
ATAGAAAAGAACCAATCAGAAATTAGGATTACAATACTGGAAATGAAAAACTTACTAAAG
GGCCTCAATAACAGAGTAGATGATAAAGAAGAACAGGTCAGTGAGCTGGATGAAAGACTA
GAGGAAATCATCCAAGCTGAACAGAAAAAAAAGGAATGAAAAAGAATGAGGAGAGTCTAA
GGGATCTCTGGGACAATATCAAGTGCACTAACATCCATGTTACACGTGTCCCAGAAAGAC
AAGAGAGAGACAAAGGGGCAGAGAATCTATTTGAAGAAATAATAGCTGAAAACTTTCCTA
ACATAAGGTAGGAAACAGACATCCAGGCACAGGAAGCACAGAGAGCACCAAACCAGATAA
ACCTAAAGAGGCCCACATCAAGACACAGTATAATTAAAAAGTCAGGAATTAAAGATAAAG
AGAGAATCCTACAAACCGCAAGATAAAGGCAAAAACTTACATACAAAAGAAGCCCCATAA
GGCTCTCAGTTGACTTCTCAGTAGAAATCTTACAGACTAGAAGGGAGTGGCACAATATAT
TTAAAGTACTGAAAGGAAAAAACCT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
RQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQKV-KLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDERL
RQ...FQV.EQDKT.EK.LNETEI.NL..K..KQKV....TDLGRRMDE.SENFN.ELENI.K.QSE...TI.EMKN.L.GLN.RVDD.EE..S.LDERL
Retrocopy
RQKNMFQVREQDKTSEKDLNETEIKNLSEKECKQKVINMFTDLGRRMDELSENFNNELENIEKNQSEIRITILEMKNLLKGLNNRVDDKEEQVSELDERL


Parental protein
EEVTQAEQIKEK-MKKTD-SLRDLWDNIKCTKIRITGVPE-EEGDKGAE-IYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPGR
EE..QAEQ.....MKK...SLRDLWDNIKCT.I..T.VPE..E.DKGAE......IAENFP....E.D.Q.QEAQ.APN.IN.KR.T.RH.I.K.S....
Retrocopy
EEIIQAEQXXXE/MKKNEESLRDLWDNIKCTNIHVTRVPERQERDKGAENLFEEIIAENFPNIR*ETDIQAQEAQRAPNQINLKRPTSRHSIIKKSGI-K


Parental protein
NKERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVL-NRKKP
.KERIL..AR.RQ..TYK...IRLS.D.S.E.LQ.RR.WH.IFKVL..RKKP
Retrocopy
DKERILQTAR*RQKLTYKRSPIRLSVDFSVEILQTRREWHNIFKVL/ERKKP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide