RetrogeneDB ID:
retro_ecab_522
Organism:
Horse ( Equus_caballus )
Location:
2:73895302-73895715 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
62.59 %
Coverage:
91.39 %
Frameshifts:
1
Stop codons:
2


Parental gene:
Parental gene symbol:
RPS14
Parental gene aliases:
No gene alias available
Parental gene description:
ribosomal protein S14 [Source:HGNC Symbol;Acc:10387]

Genomic region (view in browser)





>retro_ecab_522
AAAGAAAATAAGGAAGAATAAGTTATCAGCTTTGAACTTCAGGCGGCTGAAGAAGAGAAT
ATATTTGGTATCTGCCACATTGTTGTATCCTTCAATGACACTTTTGTCAATGTCACTGAT
CTCTCTGGCAAGGAAACCATTGGCTGTGTAACTTGTGGGATGAAGGCGAAGTTTGACCAG
AATGAATCTTCACTATATGCTGCCATGTCGGCCACCCAGGAAGTGGCCCAGAGGTACAAG
GAGCTGGACATCACTGCCCTAGGCACCAAACTCCAGGTCACAGGAGGAAATAGGACCAAG
ATCTGAGGAAATGGGGCCCATTTAATCCTCAGAGCCTTTGCCAGTCCCAAATGAATATCG
AGTGGACTGAGGATGTCCTTTACATTCCCGGACAGTGCCTGCAGGAAGGGGGT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KEKKEEQVISLGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAMLAAQDVAQRCKELGITALHIKLRATGGNRTK
KE.KEE.VIS...Q.AE.EN.FG.CHI..SFNDTFV.VTDLSGKETI..VT.GMK.K.D..ESS.YAAM.A.Q.VAQR.KEL.ITAL..KL..TGGNRTK
Retrocopy
KENKEE*VISFELQAAEEENIFGICHIVVSFNDTFVNVTDLSGKETIGCVTCGMKAKFDQNESSLYAAMSATQEVAQRYKELDITALGTKLQVTGGNRTK


Parental protein
TPGPGAQSALRA-LARSGMKIGRIEDVTPIPSDSTRRKG
..G.GA...LRA.L..S.M.I...EDV..IP.......G
Retrocopy
I*GNGAHLILRA/LCQSQMNIEWTEDVLYIPGQCLQEGG


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide