RetrogeneDB ID:
retro_ecab_523
Organism:
Horse ( Equus_caballus )
Location:
2:82472394-82472707 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
56.07 %
Coverage:
53.27 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_523
GAAGCCAAGAGAACTCCTAATTACATCAATGCAAAAACACCTTCTGCGAGGCATGTAATA
TTAAAACTGTCAAAAATCAATGACAAAGAAAGAATATTGAGGGTAGCCAGAGAAGAAAAT
AACTTAAAAGGAACCTTCACCAGGCTTTCAGCATATTTCTCAACAGAAACTACAGGTTAG
GAGAGAATACAGCGATTTATTCAAAATATTGAAAGACAAAAACTATCAGCCAACAATATT
CTATCCAGCAAAGTTATCCTTCAGATATGACGGAAAGATGAAAGCTTTCCGAGACAAACA
AAAGCTGAGGGAT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.07
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EANRTPNYINVERPSPRHILVKLAKLVMKEYIMAEAARQKKITYKGSPIRLSADFS-QTVQTRREWNDIIKILKYKNYPPRILYPVKLSFRYGREIKAFQ
EA.RTPNYIN...PS.RH...KL.K...KE.I...A........KG...RLSA.FS.Q..Q.RRE..D..KILK.KNY.P.I.YP.KLSFRY....KAF.
Retrocopy
EAKRTPNYINAKTPSARHVILKLSKINDKERILRVAREENNL--KGTFTRLSAYFS\QKLQVRREYSDLFKILKDKNYQPTIFYPAKLSFRYDGKMKAFR


Parental protein
DKQKLRE
DKQKLR.
Retrocopy
DKQKLRD


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide