RetrogeneDB ID:
retro_ecab_524
Organism:
Horse ( Equus_caballus )
Location:
2:100960228-100960756 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
60.89 %
Coverage:
56.95 %
Frameshifts:
2
Stop codons:
2


Parental gene:
Parental gene symbol:
RNPS1
Parental gene aliases:
No gene alias available
Parental gene description:
RNA binding protein S1, serine-rich domain [Source:HGNC Symbol;Acc:10080]

Genomic region (view in browser)





>retro_ecab_524
GAAGTCCCAGCACTTCCCGCAGCTCCAGCTCCAGCAGCTCTTCCGCCTCTCAGAGTCCTT
CTTGGCGCAGACATGACAACAGGCGGCATTCCAGGCCCCAATCCAAACCGCCCAAAAGAG
ATGAAAAAAAAAGGAAAAGGCGGAGCACTTCCCCTAAACCCACCCCAGTGCATATTGGGA
GGCTCACTAGCAATGTGACCAAGGATCACGTCATGGAGACATTCTCCACCTGTGGGAAAA
TTTAAATGATTGACATGCCTGTAGAAAGGACACATCCCGATCTATCTTAAGGCCACAGAT
ATGTGGAGTCTGAGAATCCAGGTGAAGCCGAGAAGGCCCTGAAGCACATGGACAGAGGAC
AAATCGCCAGCCAGGGAATCACAGCCACCGCTGTGCTGGCCCTCTGGCCTAGGCCTCCCC
TGGTGATTCAGCCCTCCCAGGAGAAGGCTGCCACACCCTCCATGTGGCGCAGGTCAGGTC
AGCAGATGCATGAGGAGAAGGTCGCGCTCCCCCAGGCATCCCCCGCCA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EVPAHPAAPAPAAPLVLQVLLGADMTTGSRSKSKP--PK-RDEKERKRR--LPLNPPKCTSGDSPNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGY
EVPA.PAAPAPAA...L.VLLGADMTTG......P..PK.RD....KRR...P...P........NVTKDH.ME.FST.GKI.MIDMPVER.HP.LS.G.
Retrocopy
EVPALPAAPAPAALPPLRVLLGADMTTGGIPGPNPNRPK/RDXXXXKRRSTSPKPTPVHIGRLTSNVTKDHVMETFSTCGKI*MIDMPVERTHPDLS*GH


Parental protein
AYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPWPRPPPRRFSPPRRMLPPPPMWRRSPPRMR-RR-SRSPRRRSP
.YVE.ENP.EAEKALKHMD.GQI..Q.ITATAVLA.WPR.PP....P.......P.MWRRS...M..RR.SRSPR...P
Retrocopy
RYVESENPGEAEKALKHMDRGQIASQGITATAVLALWPR-PPLVIQPSQEKAATPSMWRRSGQQMH\RRRSRSPRHPPP


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide