RetrogeneDB ID:
retro_ecab_526
Organism:
Horse ( Equus_caballus )
Location:
2:102132523-102132774 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
73.26 %
Coverage:
52.8 %
Frameshifts:
1
Stop codons:
1


Parental gene:
Parental gene symbol:
ATP5H
Parental gene aliases:
No gene alias available
Parental gene description:
ATP synthase, H+ transporting, mitochondrial Fo complex, subunit d [Source:HGNC Symbol;Acc:845]

Genomic region (view in browser)





>retro_ecab_526
TTTAATGCCCTGAAAATTCCTGAGCCAGAAGATAAATACAGTATCTAGGTGGCTGCTGAA
GAAAAGATGTGAAAAGTTTTGCTGAGTTTTTGTCTCTTTCAAAGGCTGTGATTGAGGAAT
ACAAGAAAGAGCTAGAGAAGATAAAGAACATAATTCCATTTGATCACATAACCATTGAGG
ATTTGAATGAAATCTTCACAGAAACCAACTTAAACAAGAAGAAGCATCCCTATTGGCCTC
ACAAGCAACTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
FNALKVPVPEDKYTVQVDAEE-KEDVKSCAEFLSLSKARIEEYEKELEKMKNIIPFDQMTIEDLNEVFPETKLDKKKYPYWPHKPI
FNALK.P.PEDKY...V.A.E...DVKS.AEFLSLSKA.IEEY.KELEK.KNIIPFD..TIEDLNE.F.ET.L.KKK.PYWPHK..
Retrocopy
FNALKIPEPEDKYSI*V-AAE/RKDVKSFAEFLSLSKAVIEEYKKELEKIKNIIPFDHITIEDLNEIFTETNLNKKKHPYWPHKQL


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide