RetrogeneDB ID:
retro_ecab_527
Organism:
Horse ( Equus_caballus )
Location:
2:109580431-109581719 (-)
Status:
KNOWN_PSEUDOGENE
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
93.04 %
Coverage:
69.81 %
Frameshifts:
1
Stop codons:
0


Parental gene:
Parental gene symbol:
MTMR1
Parental gene aliases:
No gene alias available
Parental gene description:
myotubularin related protein 1 [Source:HGNC Symbol;Acc:7449]

Genomic region (view in browser)





>retro_ecab_527
GAATGGTGTAAACAGCTTATAGCTTCTAGCATTTCTAGTCAGATTTCAGGTCCAGTGACA
TCAGAAAATGTATCCAGAGATTACAAGGCTCTAAGAGATGGAAATAAGCTGGCACAGATG
GAAGAAGCACCACTTTTTCCAGGAGAGTCGATCAAGGCCGTTGTGAAAGACGTCACGTAT
GTCTGCCCATTTATGGAAGCAGTGAGTGGAACCCTGACAGTGACTGACTTCAAGAGGTAC
TTCAGAAATGTAGAGGGACCCACATTTCGTCCTTGATGTTCCCCTGGGTGTGATCAGCAG
AGTTGAGAAGATTGGCGCGCAGAGCCACGAGGACAATTCTTGTGGTATAGAGATCGTGTG
CAAGGATATGAGGAACTTACGACTTGCTTACAAACAGGAAGAACAGAGTAAACTGGGGAT
ATTTGAAAACCTCACCGAACGTGCATTTCCTCTTTCCAACGGACAGGCACTCTTTGCATT
CAACCATAAAGAGAAATTTCCAATTAATGCATGGAAAGTTTATGATCCAGTATCTGAATA
TAAGAGACAGGGCTTGCCAAATGAGAGTTGGAAAATATCCAAAGTAAACAGTAATTATGA
GCTCTGTGACACCTACCCTGCCATCATTGTTGTGCCAACTAGTGTGAAAGATGATGACCT
TTCAAAAGTGGCAGCCTTTCGAGCAAAAGGCAGAGTCCCTGTGTTGTCATGGATTCATCC
AGAAAGTGAGGCAACGATTACCCGTTGCAGCCAGCTACTTGTGGGTCCCAATGATAAATG
CTGCAAAGAAGATGAAAAATACTTGCAAACAATAATGGATGCTTATGCACAGTCTCACAA
ACTTATCATCTTTGATGCCCGACAAAACAGTGTTGCTGATACTAACAAGGCAAAGGGTGG
AGGATATGAAACTGAAAGTGCTTACCCCAACGCAGAACTCGTGTTCTTGGAGATCCACAA
CATTCACGTGTTGAGAGAGTCACTACGTAAATTGAAAGAGATTGTGCACCCTTCCATCGA
TGAGACACAGTGGCTGTCCAACGTGGATGGGACGCATTGGCTAGAGTATATAAGGATGCT
TCTTGCTGGGGCAGTAAGAATTGCCGATAAAATAGAATCTGGGAAAACTTCGGTGGTGGT
GCATTGCAGCGATGGTTGGGACCGAACAGCCCAGCTGATGTCTCCGGCCATGCTGATGTT
GGACAGTTATTATCGTACCATTAAAGGGTTCGAGGCTCTCATAGAAAAGGAGTGGATCAG
CTTTGGACATAAGTTTGCACTGTGTGTG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.3
SRP021940_embryo 0.24
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
EWCKQLIAATISSQISGSVTSENVSRDYKALRDGNKLAQMEEAPLFPGESIKAIVKDVMYICPFMGAVSGTLTVTDFKMYFKNVERDPHF-VLDVPLGVI
EWCKQLIA..ISSQISG.VTSENVSRDYKALRDGNKLAQMEEAPLFPGESIKA.VKDV.Y.CPFM.AVSGTLTVTDFK.YF.NVE..P.F.VLDVPLGVI
Retrocopy
EWCKQLIASSISSQISGPVTSENVSRDYKALRDGNKLAQMEEAPLFPGESIKAVVKDVTYVCPFMEAVSGTLTVTDFKRYFRNVE-GPTF\VLDVPLGVI


Parental protein
SRVEKIGAQSHGDNSCGIEIVCKDMRNLRLAYKQEEQSKLGIFENLTKHAFPLSNGQALFAFNYKEKFPINGWKVYDPVSEYKRQGLPNESWKISKVNSN
SRVEKIGAQSH.DNSCGIEIVCKDMRNLRLAYKQEEQSKLGIFENLT..AFPLSNGQALFAFN.KEKFPIN.WKVYDPVSEYKRQGLPNESWKISKVNSN
Retrocopy
SRVEKIGAQSHEDNSCGIEIVCKDMRNLRLAYKQEEQSKLGIFENLTERAFPLSNGQALFAFNHKEKFPINAWKVYDPVSEYKRQGLPNESWKISKVNSN


Parental protein
YELCDTYPAIIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESQATITRCSQPLVGPNDKRCKEDEKYLQTIMDANAQSHKLIIFDARQNSVADTNKAK
YELCDTYPAIIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPES.ATITRCSQ.LVGPNDK.CKEDEKYLQTIMDA.AQSHKLIIFDARQNSVADTNKAK
Retrocopy
YELCDTYPAIIVVPTSVKDDDLSKVAAFRAKGRVPVLSWIHPESEATITRCSQLLVGPNDKCCKEDEKYLQTIMDAYAQSHKLIIFDARQNSVADTNKAK


Parental protein
GGGYESESAYPNAELVFLEIHNIHVMRESLRKLKEIVYPSIDEARWLSNVDGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLTSLAML
GGGYE.ESAYPNAELVFLEIHNIHV.RESLRKLKEIV.PSIDE..WLSNVDGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQL.S.AML
Retrocopy
GGGYETESAYPNAELVFLEIHNIHVLRESLRKLKEIVHPSIDETQWLSNVDGTHWLEYIRMLLAGAVRIADKIESGKTSVVVHCSDGWDRTAQLMSPAML


Parental protein
MLDSYYRTIKGFEALIEKEWISFGHKFALRV
MLDSYYRTIKGFEALIEKEWISFGHKFAL.V
Retrocopy
MLDSYYRTIKGFEALIEKEWISFGHKFALCV


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide