RetrogeneDB ID:
retro_ecab_531
Organism:
Horse ( Equus_caballus )
Location:
2:119501113-119501773 (-)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
52.21 %
Coverage:
98.21 %
Frameshifts:
2
Stop codons:
4


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_531
AAATCATAAATCTGAAGAACTAAAAAATTCAATAGAGGGGTCAAGAGCAGACTAGATGAA
GCAGAAAAAAGGATCAGCAAATGCAAAGATAGGGCAGTGGAATTCATCTACTCAAAGCAG
CAAAGACAGTGAAAAGGAGTGAAGACAGCTGACAAGATTAAACGGACACTATCAAGTGGA
CTTATAGTCACATATGGGGTCCCACAAGGAGAAGAGAGAGAGAAAAGAGCAAAAAACTTA
TCTGAAGGAATAACGGCTGAAAATTTCCCTACCCTGGAGGAGGAAACAGACATCCAGATC
CAGGAAGCCCAGAGAGTTCCAAATAAGATGAACCCAAAGAGATCACACCAAGACACATTA
TAATCAAATTATCAAAAGTTAAAGACAAGGAGAGAATCTTAAAAGCAGCAAGAGAAAAAC
AACTTATTATGTACAAGGGAACCCCCATAAAACTGTCAGCAGATTTTTCAGCAGAAACTT
TGCAGGACAAAAGGGAGTGGCACAATATATTCAAAGTGCTGAAAGAAAAAAAAACTACCA
ACCAAGAATACTCCAGCAAAGTTGTCCTTTAGAAATGAAGGAGAGATAAAGAGTTTTCCA
GACAAACAAAAGCTGAAGGAGTTCATAACCACAAGACTGACTCTATAAGAAGTGTTAAAG

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.06
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
KSAITEKKSSLNGFNSRFKQVEERINLLDD-ILEEITRAEQKEEKRIRQNENSLRELWDNIKCANIHVIGVP---EERQRGRKLFEEIIAEIFPNLRKET
KS.I...K....G..SR....E.RI....D...E.I....Q...K.........R.L........I...GVP...E...R...L.E.I.AE.FP.L..ET
Retrocopy
KS*I*RTKKFNRGVKSRLDEAEKRISKCKDRAVEFIYSKQQRQ*KGVKTADKIKRTLSSGL----IVTYGVPQGEEREKRAKNLSEGITAENFPTLEEET


Parental protein
DTQVQEAQRVPNKTSPKRP-TSRHIIIKMSKIKDKERILKAARERQQVTYKGKPIRLSVDFSAKTLQVRREWHDIFKVKEKNLQPRILY-PARLSFTMEG
D.Q.QEAQRVPNK..PKR..T.RHIIIK.SK.KDKERILKAARE.Q...YKG.PI.LS.DFSA.TLQ..REWH.IFKV..........Y.PA.LSF..EG
Retrocopy
DIQIQEAQRVPNKMNPKRS/TPRHIIIKLSKVKDKERILKAAREKQLIMYKGTPIKLSADFSAETLQDKREWHNIFKVLKXXXXTNQEY\PAKLSFRNEG


Parental protein
EIKSFQDKQKLKEFITKKPILQEMLK
EIKSF.DKQKLKEFIT....L.E.LK
Retrocopy
EIKSFPDKQKLKEFITTRLTL*EVLK


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide