RetrogeneDB ID:
retro_ecab_532
Organism:
Horse ( Equus_caballus )
Location:
20:1258425-1258819 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.32 %
Coverage:
67.53 %
Frameshifts:
4
Stop codons:
1


Parental gene:
Parental gene symbol:
PBDC1
Parental gene aliases:
No gene alias available
Parental gene description:
polysaccharide biosynthesis domain containing 1 [Source:HGNC Symbol;Acc:28790]

Genomic region (view in browser)





>retro_ecab_532
CTGATTTCATCAGTTGACCCACAGTTCTGAAACTCACCAAAGTGGATGAACAAGTCTATT
CCGACTTCTGGGAAAATTCTGAGAAACTCAGGATAGATGTTTTTGACTTAGAAGAGCTCA
ACTCAGAATTGGCAAAAGAGAAGTGGAGGCCATTCCCCCAGCAGTTTGATGGGATTGCAG
AAGACTTCGACTATAGTATTTTGCTGCAACTGTACTGTTTTCAGGCCTACATTGGAGGAA
AACACCATTTTGCCTGCAGGATACAATTTTTTGCCATTGAAATTGCTCAAAATTGAGAAG
GCTATAGCAAAGCAGTTTACACTAGTGTTCAGGACAGAGAAGGAGAGAAAGGAGCCAAAA
CAGAAGAAAGAATGGAGCTGACTGTGGAGGAGAA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
LISSVDPQF-LKLTKVDDQIYSEFRENFEKLRIDVLDPEELKSESAKEKWRPFCLKFDGIVEDFNYGTLLRLDCSQGYT-EENTI-FAPRIQFFAIEIAR
LISSVDPQF.LKLTKVD.Q.YS.F.EN.EKLRIDV.D.EEL.SE.AKEKWRPF...FDGI.EDF.Y..LL.L.C.Q.Y..EENTI.FA.RIQFFAIEIA.
Retrocopy
LISSVDPQF/LKLTKVDEQVYSDFWENSEKLRIDVFDLEELNSELAKEKWRPFPQQFDGIAEDFDYSILLQLYCFQAYI\EENTI/FACRIQFFAIEIAQ


Parental protein
NREGCNKAVYTSVKDKE-EKGA-NNGGEKGADSGGE
N.EG..KAVYTSV.D.E.EKGA..N....GAD.GGE
Retrocopy
N*EGYSKAVYTSVQDREGEKGA/QNRRKNGADCGGE


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide