RetrogeneDB ID:
retro_ecab_533
Organism:
Horse ( Equus_caballus )
Location:
20:3676304-3676831 (+)
Status:
KNOWN_PSEUDOGENE
Ensembl ID:
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary
Identity:
64.41 %
Coverage:
61.32 %
Frameshifts:
1
Stop codons:
0
Parental gene:
Parental gene symbol:
PDCD2
Parental gene aliases:
No gene alias available
Parental gene description:
programmed cell death 2 [Source:HGNC Symbol;Acc:8762]
Genomic region (view in browser)
>retro_ecab_533
GAGCAGGGCTGGACACAATCAGGTAGTGTGGACCGTGCAGCTCCGGACCGCAACTTCCTC
TCCCCAGAATTTGAAATCCTAATAGAAACAGAAGGTGAGATTATGCCTGAAGTTTTGGAA
AAGGAAGATGACTCAGAGACTCCCGGGCGCACAGGAGAAGCGCCTGAAGAAGAATTGGGT
TCCAGAGCAAAACATGAGTCCAGGGAAGAGAAAACTTTCCGGAAGTTTAAAACTAAAATA
GTCCTTGAACCAGAACAGAGTCTCAGACATGGCAGAGGGATTGCTGCCATCTGGATTTCT
GGAGAAAATATTCCTGAAGAACAGGAGATTCCAGACTGCCCCTGTGGTGCCCAGAGGACA
TTTGAATTCCAGATCATGTCTCAGCTGCTCAGCTGCACACAGGCTGGCAGACTGGGCGGG
AGCATCGTCCTGGGCAGCCAGGCTGGCTTCGCCTGTGCAGAAAACTACAGACTGGGCACC
GGCTACACAGAGGACTCTGTGTGGAAGCAAGAGGTAACGATACACCT
| Library | Expression (reads per million mapped reads) |
|---|---|
| SRP021940_articular_cartilage | 0.0 |
| SRP021940_cerebellum | 0.0 |
| SRP021940_embryo | 0.0 |
| SRP021940_placental_villous | 0.0 |
| SRP021940_synovial_membrane | 0.0 |
| SRP021940_testis | 0.0 |
Parental protein coverage
Changes in the retrocopy sequence
