RetrogeneDB ID:
retro_ecab_537
Organism:
Horse ( Equus_caballus )
Location:
20:24579857-24580739 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
None
Alignment summary

Identity:
71.14 %
Coverage:
100.0 %
Frameshifts:
2
Stop codons:
1


Parental gene:
Parental gene symbol:
No gene symbol available
Parental gene aliases:
No gene alias available
Parental gene description:
No gene description available

Genomic region (view in browser)





>retro_ecab_537
ATGAGTAGGCAAAGGAATACATTACAAGCAAGGGAACAGGACAAAACCCTAGAAAAAGAA
CTAAATGAAACAGAAATAAGCAATCTACCTGGCAAAGAGTTCAGACAAAAAGCCATAAGA
ATGCTCACTGATCTTGGGAGAATACTGAATGAACACAGTGAGAATATCAACAAAGAACTG
GAAAATATAAAAAAGAACCAATCAGAAATGAAGAATACAATGCAGGTTATGAAAAATTCA
CTAGAGGGACTGAATAGCAGAGTAGATGATATAGAAGAATGGATCAGTGAGCTGGATGAA
AGATCAGAGGAATTCACCCAAGCTGAACAGATAAAAGAAAAAAGAATTTAAAAGAACAGG
GACAGTCTAAGGGAACTCTGGGACAATATCGAGTGCACTAACATTTGTATCATAGGCGTC
CCAGAAAGAGGAGAGAGACAAAAGGAATTCATTTGAAGAAATAATAACAGAAATCTTTCC
TAACCTAAGGAAAGAAACAGACATCCAAGCACAGGAAGCACAGAGAGCACCAAACAAGAT
AAACCCAAGGAGGTACACACCAAGACACATTATAATTAAAATGTCCAAAATTAAAAATAA
AGAGAGAATCCTAAAAGCTGCAAGACAAAGGCAACAAGTGACACACAAAGGAAAGTCCAT
AAGGCTACTAGCAGACTTCTCAGCCAAAATTCTACAGGCTAGAAGAGAGTGGCATGACAT
ATTTAAAGTACTGAAAGGAAAAACCCTGCAAACAAGAATACTCCACCCAGCAAGGTTATC
ATTCAGATGGAAGGAGAGATAAAGAGTTTTCCAGACAAGCAAAAATTAAAGGAGTTTATC
ACCAAGAAACCAGTCCTACAAGAACTGCTGAAGGGACTTATT

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.0
SRP021940_placental_villous 0.0
SRP021940_synovial_membrane 0.0
SRP021940_testis 0.0

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
IGRQRSTFQVKEQDKTPEKELNETEISNLPDKVFKQK-VKLLTDLGRRMDEHSENFNKELENIKK-QSEMKNTIMEMKNSLEGLNSRVDDTEERISKLDE
..RQR.T.Q..EQDKT.EKELNETEISNLP.K.F.QK....LTDLGR...EHSEN.NKELENIKK.QSEMKNT...MKNSLEGLNSRVDD.EE.IS.LDE
Retrocopy
MSRQRNTLQAREQDKTLEKELNETEISNLPGKEFRQKAIRMLTDLGRILNEHSENINKELENIKKNQSEMKNTMQVMKNSLEGLNSRVDDIEEWISELDE


Parental protein
RLEEVTQAEQIKEKM--KKTDSLRDLWDNIKCTKIRITGVPE-EEGDKGAEIYLIKIAENFPKLQKEADFQVQEAQNAPNRINPKRHTPRHIINKISNPG
R.EE.TQAEQIKEK...K..DSLR.LWDNI.CT.I.I.GVPE.EE.DK......I.I.E.FP.L.KE.D.Q.QEAQ.APN.INP.R.TPRHII.K.S...
Retrocopy
RSEEFTQAEQIKEKRI*KNRDSLRELWDNIECTNICIIGVPE\EERDKRNSFEEI-ITEIFPNLRKETDIQAQEAQRAPNKINPRRYTPRHIIIKMSKI-


Parental protein
RNKERILKAARERQQVTYKGNSIRLSADLSAETLQARRKWHSIFKVLNRKK-PPRILYLARSSF-IMEGEIKCFPDKQKLKEFITKKPALQEMLKGLI
.NKERILKAAR.RQQVT.KG.SIRL.AD.SA..LQARR.WH.IFKVL..K....RIL..AR.SF..MEGEIK.FPDKQKLKEFITKKP.LQE.LKGLI
Retrocopy
KNKERILKAARQRQQVTHKGKSIRLLADFSAKILQARREWHDIFKVLKGKTLQTRILHPARLSF/QMEGEIKSFPDKQKLKEFITKKPVLQELLKGLI


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide