RetrogeneDB ID:
retro_ecab_538
Organism:
Horse ( Equus_caballus )
Location:
20:25689216-25689621 (+)
Status:
NOVEL
Ensembl ID:
None
Aliases:
No gene alias available
Located in intron of:
Alignment summary

Identity:
50.71 %
Coverage:
50.56 %
Frameshifts:
4
Stop codons:
3


Parental gene:
Parental gene symbol:
YBX1
Parental gene aliases:
No gene alias available
Parental gene description:
Y box binding protein 1 [Source:HGNC Symbol;Acc:8014]

Genomic region (view in browser)





>retro_ecab_538
CCACGCAATAACCAACAGAGTTACCAGAATACCAGGGGTGGGGAAAACAATGAAATGCTG
GACAAAGTTCCAGAAGGCAAGACTGAACAGAGCCATCTCTACTGCAGAAAGGACTTCCCA
CTTTACTACAAGCAAAGTCTACAGGTCTTGACCACAGTATTCCAACACTCTTGTGTATGG
AGAAATAATACAGGGTGCTAACAAAACAGGCTGCAAAAGAACAAGATAGACAAGTGAGAC
AGAATACACAACAGGGTAATTGATCATGATTCTGCAAGGGCCAGGTCACCAAGAAAACCC
AGAGAAGATGGCAATAAAGAGGATAAGGAAAATGATACAGACAAGGCCCAGGCCCAGTGG
CCACCTCAATGTAGGTACCATCGCAACTTCTATTACCTGTACAGA

Library Expression (reads per million mapped reads)
SRP021940_articular_cartilage 0.0
SRP021940_cerebellum 0.0
SRP021940_embryo 0.1
SRP021940_placental_villous 0.04
SRP021940_synovial_membrane 0.05
SRP021940_testis 0.18

Parental protein coverage





Changes in the retrocopy sequence






Parental protein
PRNYQQNYQNSESGEKNEGSESAPEGQAQQRRPYRRRRFPPYYMRRP-YGRRPQYSNPPVQGEVMEGAD-NQGAGEQGRPVRQNMYRGYRPRFRRG-PPR
PRN.QQ.YQN...GE.NE.....PEG...Q...Y.R..F.P.Y.....Y...PQYSN..V.GE...GA...Q.A.EQ.R.VRQN...G....F..G.P..
Retrocopy
PRNNQQSYQNTRGGENNEMLDKVPEGKTEQSHLYCRKDF-PLYYKQS\YRS*PQYSNTLVYGEIIQGAN\KQAAKEQDRQVRQNTQQGN*S*FCKG/PGH


Parental protein
Q-RQPREDGNEEDKENQGDETQGQQPPQRRYRRNFNYRRR
Q.R.PREDGN.EDKEN..D..Q.Q.PPQ.RY.RNF.Y..R
Retrocopy
Q/RKPREDGNKEDKENDTDKAQAQWPPQCRYHRNFYYLYR


Legend:
*
Stop codon
\
Forward frameshift by one nucleotide
/
Reverse frameshift by one nucleotide